Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DIP0319Similar to Mycobacterium tuberculosis CDC1551 ATP-dependent RNA helicase, DeaD/DeaH box family MT3751 TR:AAK48112 (EMBL:AE007173) (771 aa) fasta scores: E(): 1.3e-152, 54.73% id in 760 aa, and to Bacillus subtilis putative helicase YprA SW:YPRA_BACSU (P50830) (749 aa) fasta scores: E(): 4.7e-67, 34.86% id in 763 aa. (778 aa)    
Predicted Functional Partners:
DIP1859
DeaD/DeaH family helicase; Similar to Escherichia coli probable ATP-dependent helicase DinG SW:DING_ECOLI (P27296) (716 aa) fasta scores: E(): 5.6e-15, 27.57% id in 689 aa, and to Mycobacterium tuberculosis probable ATP-dependent helicase DinG homologue Rv1329c SW:DING_MYCTU (Q10640) (664 aa) fasta scores: E(): 2.2e-131, 55.84% id in 659 aa.
  
   
 0.713
cspA
Cold-shock protein; Similar to Mycobacterium smegmatis cold-shock protein CspA TR:Q9KGW0 (EMBL:AF281675) (67 aa) fasta scores: E(): 5.8e-23, 86.56% id in 67 aa.
     
 0.640
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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