STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0416Putative membrane protein; Low similarity to Mycobacterium tuberculosis CDC1551 hypothetical 6.1 kDa protein MT0553 TR:AAK44776 (EMBL:AE006954) (53 aa) fasta scores: E(): 4, 34.04% id in 47 aa. (62 aa)    
Predicted Functional Partners:
DIP0415
Similar to Streptomyces coelicolor putative ArsR-family transcriptional regulator SC4A9.07 TR:Q9L1V5 (EMBL:AL138668) (117 aa) fasta scores: E(): 7.2e-10, 44.57% id in 83 aa, and to Methanococcus jannaschii hypothetical protein MJ1325 TR:Q58721 (EMBL:U67573) (89 aa) fasta scores: E(): 5.1e-09, 42.16% id in 83 aa.
  
    0.763
DIP2241
Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SC7E4.28c TR:Q9K492 (EMBL:AL359214) (254 aa) fasta scores: E(): 7.3e-21, 34.82% id in 224 aa, and to Escherichia coli fatty acyl responsive regulator FarR or G30 or B0730 SW:FARR_ECOLI (P13669) (240 aa) fasta scores: E(): 6.4e-14, 30.93% id in 236 aa.
   
    0.744
DIP0417
Putative membrane protein; Similar to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein MT0554 TR:AAK44777 (EMBL:AE006954) (105 aa) fasta scores: E(): 3.1e-05, 35.8% id in 81 aa.
  
    0.725
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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