STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0515Similar to Escherichia coli O157:H7 EDL933 putative transport protein Z1054 TR:AAG55204 (EMBL:AE005264) (512 aa) fasta scores: E(): 4.3e-19, 24% id in 479 aa. Note: Contains a putative twin-arginine translocation (TAT) system recognition motif (RRDFFK) at the N-terminal region. (538 aa)    
Predicted Functional Partners:
DIP0513
Putative oligopeptide transport system (integral membrane and ATP-binding proteins); C-terminal region similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or STM1743 SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 3.2e-38, 42.07% id in 328 aa, and N-terminal region to Bacillus firmus dipeptide transport system permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: E(): 4.2e-32, 41.19% id in 267 aa.
 
 
 0.949
DIP0514
Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 4.6e-31, 34.7% id in 317 aa.
 
   0.932
DIP0511
Conserved hypothetical protein (pseudogene; 1 probable transmembrane helix predicted for DIP0508 by TMHMM2.0; Belongs to the DapA family.
 
     0.855
DIP0512
Similar to Bacillus subtilis oligopeptide transport ATP-binding protein OppF or Spo0KE SW:OPPF_BACSU (P24137) (308 aa) fasta scores: E(): 1.7e-36, 48.51% id in 235 aa.
 
    0.853
DIP0517
Putative GntR family regulatory protein; Similar to Escherichia coli galactonate operon transcriptional repressor DgoR or B3694/B3695 SW:DGOR_ECOLI (P31460) (229 aa) fasta scores: E(): 8.4e-09, 23.11% id in 199 aa.
 
     0.835
DIP2126
Similar to Streptomyces coelicolor putative transport permease protein SC9B5.20 TR:Q9ZBG0 (EMBL:AL035206) (312 aa) fasta scores: E(): 4.4e-32, 45.27% id in 254 aa, and to Bacillus subtilis dipeptide transport system permease protein DppC or DciAC SW:DPPC_BACSU (P26904) (320 aa) fasta scores: E(): 4.3e-23, 37.19% id in 242 aa.
 
 
 0.822
DIP0519
Putative epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
     0.775
DIP0325
Similar to Streptomyces coelicolor putative transport system permease protein SC4G2.19 TR:O86691 (EMBL:AL031371) (601 aa) fasta scores: E(): 1.9e-62, 37.01% id in 570 aa.
 
 
 0.724
gntP
Gluconate permease; Similar to Corynebacterium glutamicum gluconate permease GntP TR:Q9AL75 (EMBL:AJ296014) (463 aa) fasta scores: E(): 2.9e-113, 69.34% id in 460 aa, and to Bacillus subtilis gluconate permease GntP SW:GNTP_BACSU (P12012) (448 aa) fasta scores: E(): 4.8e-53, 38.58% id in 451 aa.
   
    0.677
DIP2078
Putative membrane transport protein; Similar to Corynebacterium glutamicum gluconate permease GntP SWALL:Q9AL75 (EMBL:AJ296014) (463 aa) fasta scores: E(): 3.8e-50, 36.3% id in 449 aa, and to Escherichia coli Gnt-II system L-idonate transporter IdnT or GntW or B4265 SWALL:IDNT_ECOLI (SWALL:P39344) (439 aa) fasta scores: E(): 3.4e-44, 31.98% id in 444 aa, and to Escherichia coli high-affinity gluconate transporter GntP or B4321 or Z5919 or ECS5280 SWALL:GNTP_ECOLI (SWALL:P39373) (447 aa) fasta scores: E(): 5.1e-39, 31.49% id in 435 aa.
   
    0.677
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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