cspB protein (Corynebacterium diphtheriae) - STRING interaction network

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cspB

Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa. (129 aa)

Predicted Functional Partners:

DIP0245

0.734

gdh

0.623

rplW

0.619

rpsL

0.583

rpsQ

0.573

rplX

0.548

rpmC

0.534

rplV

0.531

rplC

0.530

rpsK

0.513

Your Current Organism:

Corynebacterium diphtheriae

NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DIP0245	cspB	DIP0245	DIP0776	Putative prephenate dehydrogenase; Similar to Mycobacterium tuberculosis CDC1551 prephenate dehydrogenase MT3861 TR:AAK48225 (EMBL:AE007181) (323 aa) fasta scores: E(): 5.5e-49, 52.31% id in 281 aa, and to Bacillus subtilis prephenate dehydrogenase TyrA SW:TYRA_BACSU (P20692) (372 aa) fasta scores: E(): 2.7e-15, 31.9% id in 279 aa.	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	0.734
cspB	DIP0245	DIP0776	DIP0245	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	Putative prephenate dehydrogenase; Similar to Mycobacterium tuberculosis CDC1551 prephenate dehydrogenase MT3861 TR:AAK48225 (EMBL:AE007181) (323 aa) fasta scores: E(): 5.5e-49, 52.31% id in 281 aa, and to Bacillus subtilis prephenate dehydrogenase TyrA SW:TYRA_BACSU (P20692) (372 aa) fasta scores: E(): 2.7e-15, 31.9% id in 279 aa.	0.734
cspB	gdh	DIP0776	DIP1547	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	Similar to Corynebacterium glutamicum NADP-specific glutamate dehydrogenase Gdh SW:DHE4_CORGL (P31026) (447 aa) fasta scores: E(): 6.8e-138, 77.84% id in 465 aa, and to Escherichia coli NADP-specific glutamate dehydrogenase GdhA or B1761 SW:DHE4_ECOLI (P00370) (447 aa) fasta scores: E(): 3.6e-97, 59.55% id in 445 aa; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.623
cspB	rplC	DIP0776	DIP0473	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.530
cspB	rplV	DIP0776	DIP0478	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.531
cspB	rplW	DIP0776	DIP0475	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.619
cspB	rplX	DIP0776	DIP0487	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.548
cspB	rpmC	DIP0776	DIP0481	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	Similar to Mycobacterium bovis 50S ribosomal protein L29 RpmC SW:RL29_MYCBO (O06050) (75 aa) fasta scores: E(): 1.1e-12, 67.16% id in 67 aa; Belongs to the universal ribosomal protein uL29 family.	0.534
cspB	rpsK	DIP0776	DIP0547	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.513
cspB	rpsL	DIP0776	DIP0467	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.583
cspB	rpsQ	DIP0776	DIP0482	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.573
gdh	cspB	DIP1547	DIP0776	Similar to Corynebacterium glutamicum NADP-specific glutamate dehydrogenase Gdh SW:DHE4_CORGL (P31026) (447 aa) fasta scores: E(): 6.8e-138, 77.84% id in 465 aa, and to Escherichia coli NADP-specific glutamate dehydrogenase GdhA or B1761 SW:DHE4_ECOLI (P00370) (447 aa) fasta scores: E(): 3.6e-97, 59.55% id in 445 aa; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	0.623
rplC	cspB	DIP0473	DIP0776	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Cold shock protein B; Similar to Mycobacterium tuberculosis cold shock protein B CspB or Rv0871 or MTV043.64 TR:O53883 (EMBL:AL022004) (135 aa) fasta scores: E(): 8.9e-24, 52.23% id in 134 aa, and to Streptomyces coelicolor cold shock protein B CspB TR:Q9KXN2 (EMBL:AL357524) (127 aa) fasta scores: E(): 1.8e-19, 48.06% id in 129 aa.	0.530
rplC	rplV	DIP0473	DIP0478	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.999
rplC	rplW	DIP0473	DIP0475	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rplX	DIP0473	DIP0487	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
rplC	rpmC	DIP0473	DIP0481	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Similar to Mycobacterium bovis 50S ribosomal protein L29 RpmC SW:RL29_MYCBO (O06050) (75 aa) fasta scores: E(): 1.1e-12, 67.16% id in 67 aa; Belongs to the universal ribosomal protein uL29 family.	0.998
rplC	rpsK	DIP0473	DIP0547	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.997
rplC	rpsL	DIP0473	DIP0467	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.997
rplC	rpsQ	DIP0473	DIP0482	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999

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