STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0870Putative membrane protein; Similar to Staphylococcus aureus (strain N315) hypothetical protein SA2305 or SAV2517 TR:BAB58679 (EMBL:AP003137) (359 aa) fasta scores: E(): 1.3e-35, 32.55% id in 344 aa. (487 aa)    
Predicted Functional Partners:
DIP2323
Similar to Streptomyces coelicolor putative ABC transport system ATP-binding protein SC10A9.09c SWALL:Q9AK95 (EMBL:AL583943) (251 aa) fasta scores: E(): 4.7e-31, 51.35% id in 222 aa.
      
 0.842
rsmI
Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.570
betP
Similar to Corynebacterium glutamicum glycine betaine transporter BetP SW:BETP_CORGL (P54582) (595 aa) fasta scores: E(): 7.8e-154, 70.87% id in 563 aa, and to Bacillus subtilis glycine betaine transporter OpuD SW:OPUD_BACSU (P54417) (512 aa) fasta scores: E(): 1.1e-76, 43.52% id in 517 aa; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.562
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.530
DIP0873
Conserved hypothetical protein; Similar to Corynebacterium glutamicum Mg-dependent DNAse CGL0908 SWALL:Q8NRY3 (EMBL:AP005276) (277 aa) fasta scores: E(): 3.7e-81, 73.74% id in 278 aa, and to Mycobacterium tuberculosis hypothetical protein Ycfh Rv1008 or MTCI237.25 TR:O08343 (EMBL:Z94752) (264 aa) fasta scores: E(): 4.4e-40, 44.61% id in 260 aa.
       0.452
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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