| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DIP0953 | DIP0954 | DIP0953 | DIP0954 | Putative ABC transport system ATP-binding protein; Similar to Staphylococcus aureus (strain N315) SA0928 protein or SAV1076 TR:BAB57238 (EMBL:AP003132) (466 aa) fasta scores: E(): 6.9e-32, 34.18% id in 433 aa. | Putative ABC transport system membrane protein; Low similarity to Bacillus subtilis YkoC TR:O34572 (EMBL:AJ002571) (254 aa) fasta scores: E(): 1.3e-06, 24.48% id in 241 aa. | 0.998 |
| DIP0953 | DIP0955 | DIP0953 | DIP0955 | Putative ABC transport system ATP-binding protein; Similar to Staphylococcus aureus (strain N315) SA0928 protein or SAV1076 TR:BAB57238 (EMBL:AP003132) (466 aa) fasta scores: E(): 6.9e-32, 34.18% id in 433 aa. | Hypothetical protein; No significant database matches. | 0.848 |
| DIP0954 | DIP0953 | DIP0954 | DIP0953 | Putative ABC transport system membrane protein; Low similarity to Bacillus subtilis YkoC TR:O34572 (EMBL:AJ002571) (254 aa) fasta scores: E(): 1.3e-06, 24.48% id in 241 aa. | Putative ABC transport system ATP-binding protein; Similar to Staphylococcus aureus (strain N315) SA0928 protein or SAV1076 TR:BAB57238 (EMBL:AP003132) (466 aa) fasta scores: E(): 6.9e-32, 34.18% id in 433 aa. | 0.998 |
| DIP0954 | DIP0955 | DIP0954 | DIP0955 | Putative ABC transport system membrane protein; Low similarity to Bacillus subtilis YkoC TR:O34572 (EMBL:AJ002571) (254 aa) fasta scores: E(): 1.3e-06, 24.48% id in 241 aa. | Hypothetical protein; No significant database matches. | 0.975 |
| DIP0955 | DIP0953 | DIP0955 | DIP0953 | Hypothetical protein; No significant database matches. | Putative ABC transport system ATP-binding protein; Similar to Staphylococcus aureus (strain N315) SA0928 protein or SAV1076 TR:BAB57238 (EMBL:AP003132) (466 aa) fasta scores: E(): 6.9e-32, 34.18% id in 433 aa. | 0.848 |
| DIP0955 | DIP0954 | DIP0955 | DIP0954 | Hypothetical protein; No significant database matches. | Putative ABC transport system membrane protein; Low similarity to Bacillus subtilis YkoC TR:O34572 (EMBL:AJ002571) (254 aa) fasta scores: E(): 1.3e-06, 24.48% id in 241 aa. | 0.975 |
| DIP0955 | rplB | DIP0955 | DIP0476 | Hypothetical protein; No significant database matches. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.750 |
| DIP0955 | rplE | DIP0955 | DIP0488 | Hypothetical protein; No significant database matches. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.750 |
| DIP0955 | rplN | DIP0955 | DIP0486 | Hypothetical protein; No significant database matches. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.764 |
| DIP0955 | rpsC | DIP0955 | DIP0479 | Hypothetical protein; No significant database matches. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.750 |
| DIP0955 | rpsG | DIP0955 | DIP0468 | Hypothetical protein; No significant database matches. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.777 |
| DIP0955 | rpsK | DIP0955 | DIP0547 | Hypothetical protein; No significant database matches. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.762 |
| DIP0955 | rpsS | DIP0955 | DIP0477 | Hypothetical protein; No significant database matches. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.751 |
| DIP0955 | secY | DIP0955 | DIP0540 | Hypothetical protein; No significant database matches. | Preprotein translocase SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.751 |
| rplB | DIP0955 | DIP0476 | DIP0955 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Hypothetical protein; No significant database matches. | 0.750 |
| rplB | rplE | DIP0476 | DIP0488 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
| rplB | rplN | DIP0476 | DIP0486 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplB | rpsC | DIP0476 | DIP0479 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplB | rpsG | DIP0476 | DIP0468 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rplB | rpsK | DIP0476 | DIP0547 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |