STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0961Similar to Bacillus subtilis homologous to many ATP-binding transport proteins YxlF TR:P94374 (EMBL:D83026) (295 aa) fasta scores: E(): 6.4e-12, 31.22% id in 221 aa, and to Escherichia coli, and putative aliphatic sulfonates transport ATP-binding protein SsuB or B0933 or Z1281 or ECS1016 SW:SSUB_ECOLI (P38053) (255 aa) fasta scores: E(): 3.3e-08, 31.25% id in 208 aa. (231 aa)    
Predicted Functional Partners:
DIP0960
Hypothetical protein; No significant database matches.
       0.773
DIP0962
Putative membrane protein; No significant database matches.
       0.773
DIP0963
Putative membrane protein; No significant database matches.
       0.773
DIP0954
Putative ABC transport system membrane protein; Low similarity to Bacillus subtilis YkoC TR:O34572 (EMBL:AJ002571) (254 aa) fasta scores: E(): 1.3e-06, 24.48% id in 241 aa.
  
 
 0.713
DIP1454
Putative membrane protein; Similar to Deinococcus radiodurans conserved hypothetical protein DR2468 TR:Q9RRM0 (EMBL:AE002076) (198 aa) fasta scores: E(): 7.8e-15, 36.18% id in 199 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC00963 TR:CAC45461 (EMBL:AL591785) (201 aa) fasta scores: E(): 2.5e-07, 29.38% id in 194 aa.
  
 
 0.713
DIP2342
Similar to Streptomyces coelicolor putative integral membrane transport protein SCE87.11 SWALL:Q9RKC7 (EMBL:AL132674) (253 aa) fasta scores: E(): 0.082, 26.54% id in 226 aa.
  
 
 0.713
DIP1452
Putative membrane protein; Similar to Streptococcus pyogenes putative biotin synthase SPY0207 TR:Q9A1L4 (EMBL:AE006489) (179 aa) fasta scores: E(): 2e-15, 37.57% id in 173 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC00964 TR:CAC45460 (EMBL:AL591785) (187 aa) fasta scores: E(): 2.7e-14, 37.43% id in 179 aa.
   
 
 0.670
DIP0908
Putative ABC transport system membrane protein; Similar to Corynebacterium striatum ABC transporter TetA TR:Q9Z4Q1 (EMBL:U21300) (513 aa) fasta scores: E(): 1.3e-45, 33.98% id in 509 aa.
  
     0.601
cysS1
Similar to Escherichia coli cysteinyl-tRNA synthetase CysS or B0526 SW:SYC_ECOLI (P21888) (461 aa) fasta scores: E(): 2.4e-70, 44.11% id in 467 aa, and to Mycobacterium tuberculosis cysteinyl-tRNA synthetase 1 Rv3580c SW:SYC1_MYCTU (P96862) (469 aa) fasta scores: E(): 1.4e-120, 64.57% id in 463 aa; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.595
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.577
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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