STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1001Putative exported protein; No database matches. (239 aa)    
Predicted Functional Partners:
DIP1000
Similar to Mycobacterium tuberculosis hypothetical 18.6 kDa protein Rv1234 or MTV006.06 TR:O50451 (EMBL:AL021006) (175 aa) fasta scores: E(): 2.9e-27, 56.42% id in 140 aa.
  
    0.955
opuBA
Similar to Bacillus subtilis choline transport ATP-binding protein OpuBA or ProV SW:OPBA_BACSU (Q45460) (381 aa) fasta scores: E(): 2.5e-42, 50.58% id in 255 aa, and to Mycobacterium tuberculosis putative ABC transporter ATP-binding protein Rv3758c or MTV025.106c TR:O69724 (EMBL:AL022121) (376 aa) fasta scores: E(): 1.3e-42, 53.62% id in 248 aa.
  
 
 0.804
DIP0999
Conserved hypothetical protein; Similar to Mycobacterium tuberculosis CDC1551 hypothetical 47.3 kDa protein MT1270 TR:AAK45528 (EMBL:AE007003) (435 aa) fasta scores: E(): 5e-77, 52.51% id in 417 aa.
  
    0.674
DIP0997
Putative ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.659
DIP0998
Putative membrane protein; Similar to Mycobacterium tuberculosis hypothetical 20.4 kDa protein Rv1231c or MTV006.03c TR:O86314 (EMBL:Z98260) (180 aa) fasta scores: E(): 4.5e-31, 60.81% id in 148 aa.
       0.637
opuBD
Similar to Bacillus subtilis choline transport system permease protein OpuBD or ProZ SW:OPBD_BACSU (P39775) (226 aa) fasta scores: E(): 8.5e-13, 29.44% id in 197 aa, and to Mycobacterium tuberculosis transport system permease Rv3757c or MTV025.105c TR:O69723 (EMBL:AL022121) (229 aa) fasta scores: E(): 4.7e-25, 39.71% id in 209 aa.
  
  
 0.511
opuBB
Similar to Bacillus subtilis choline transport system permease protein OpuBB or ProW SW:OPBB_BACSU (Q45461) (217 aa) fasta scores: E(): 3e-14, 30.72% id in 192 aa, and to Mycobacterium tuberculosis putative transport system permease Rv3756c or MTV025.104c TR:O69722 (EMBL:AL022121) (239 aa) fasta scores: E(): 1.9e-28, 48.32% id in 209 aa.
  
  
 0.485
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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