STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1004Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 27.6 kDa protein Rv1249c or MTV006.21c TR:O50464 (EMBL:AL021006) (262 aa) fasta scores: E(): 2.1e-15, 31.57% id in 209 aa. (276 aa)    
Predicted Functional Partners:
DIP1003
Similar to Streptomyces coelicolor ABC transporter protein, ATP-binding component SCC57A.34c TR:Q9RDG5 (EMBL:AL136519) (1243 aa) fasta scores: E(): 3e-116, 42.18% id in 1247 aa.
       0.842
odhA
2-oxoglutarate dehydrogenase, E1 and E2 components; Similar to Corynebacterium glutamicum 2-oxoglutarate dehydrogenase OdhA TR:P96746 (EMBL:D84102) (1257 aa) fasta scores: E(): 0, 77.37% id in 1242 aa, and to Mycobacterium leprae 2-oxoglutarate dehydrogenase, E1 and E2 components OdhA or ML1095 TR:Q9CC97 (EMBL:AL583920) (1260 aa) fasta scores: E(): 0, 59.37% id in 1253 aa. Similar in the N-terminus to Escherichia coli dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) SucB or B0727 or Z0881 or ECS0752 SW:ODO2_ECOLI (P07016) blastp scores: E(): 4 [...]
       0.657
DIP1447
Putative membrane protein; Low similarity to Mycobacterium tuberculosis CDC1551 hypothetical 19.3 kDa protein MT2802.1 TR:AAK47121 (EMBL:AE007108) (180 aa) fasta scores: E(): 3.3e-07, 25.68% id in 183 aa.
  
     0.630
DIP1097
Similar to Mycobacterium tuberculosis low molecular weight protein antigen 6 Cfp6 or Rv3004 or MT3084.1 or MTV012.18 SW:CFP6_MYCTU (O53251) (112 aa) fasta scores: E(): 7.9e-07, 34.57% id in 107 aa.
  
     0.589
DIP2107
Similar to Streptomyces coelicolor putative integral membrane transport protein SCD10.28c TR:Q9K3U9 (EMBL:AL359988) (550 aa) fasta scores: E(): 6.2e-18, 25.27% id in 542 aa. Lies alongside a putative ABC transporter ATP-binding subunit.
  
     0.579
DIP1556
Putative membrane protein; Low similarity to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein MT1645 TR:AAK45914 (EMBL:AE007029) (235 aa) fasta scores: E(): 1e-08, 28.64% id in 206 aa.
  
     0.559
DIP1705
Putative secreted protein; Similar to Mycobacterium tuberculosis hypothetical 70.0 kDa protein Rv2345 or MTCY98.14 TR:P95241 (EMBL:Z83860) (660 aa) fasta scores: E(): 1.6e-41, 30.4% id in 671 aa.
  
     0.557
DIP0679
Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 23.7 kDa protein Rv3268 or MTCY71.08 TR:P96873 (EMBL:Z92771) (229 aa) fasta scores: E(): 7.6e-11, 31.48% id in 235 aa.
  
    0.543
DIP1275
Putative DNA-binding protein; No significant database matches.
  
     0.523
DIP1006
Similar to Deinococcus radiodurans shikimate 5-dehydrogenase, putative DR0077 TR:Q9RY73 (EMBL:AE001871) (273 aa) fasta scores: E(): 1.2e-48, 54.3% id in 267 aa, and to Haemophilus influenzae hypothetical shikimate 5-dehydrogenase-like protein Hi0607 hi0607 SW:YDIB_HAEIN (P44774) (271 aa) fasta scores: E(): 1.4e-45, 49.25% id in 268 aa, and to Escherichia coli hypothetical shikimate 5-dehydrogenase-like protein ydib ydib or B1692 SW:YDIB_ECOLI (P28244) (288 aa) fasta scores: E(): 1.9e-09, 30.03% id in 263 aa.
       0.517
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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