STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1027Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 20.0 kDa protein SC1C2.14C TR:O86515 (EMBL:AL031124) (185 aa) fasta scores: E(): 1e-29, 48.04% id in 179 aa, and to Thermoplasma volcanium hypothetical protein Tvg0219791 TR:BAB59353 (EMBL:AP000991) (177 aa) fasta scores: E(): 2.4e-28, 50.93% id in 161 aa; Belongs to the UPF0312 family. (176 aa)    
Predicted Functional Partners:
DIP1028
Similar to Streptomyces coelicolor putative MarR-family transcriptional repressor SCE22.22 TR:Q9KYU1 (EMBL:AL355832) (163 aa) fasta scores: E(): 3.5e-17, 37.06% id in 143 aa, and to Escherichia coli transcriptional repressor MprA EmrR or B2684 or Z3985 or ECS3546 SW:MPRA_ECOLI (P24201) (176 aa) fasta scores: E(): 0.0011, 24.79% id in 121 aa.
 
   
 0.712
DIP1029
Similar to Streptomyces coelicolor putative membrane protein 2SCK8.29C TR:Q9AK23 (EMBL:AL589164) (67 aa) fasta scores: E(): 1.6e-05, 37.03% id in 54 aa, and to Thermotoga maritima conserved hypothetical protein TM1156 TR:Q9X0P0 (EMBL:AE001773) (129 aa) fasta scores: E(): 0.00055, 37.5% id in 56 aa.
       0.457
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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