STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1145Putative membrane protein; Similar to Vibrio cholerae hypothetical protein VCA0040 SWALL:Q9KNC5 (EMBL:AE004347) (308 aa) fasta scores: E(): 3.4e-22, 31.48% id in 270 aa, and to Methanothermobacter thermautotrophicus hypothetical 35.5 kDa protein MTH465 SWALL:O26565 (EMBL:AE000831) (319 aa) fasta scores: E(): 2.9e-18, 31.12% id in 241 aa. (310 aa)    
Predicted Functional Partners:
DIP1144
Putative secreted protein; Similar to Rhizobium spTAL1145 MidA SWALL:Q9EYT2 (EMBL:AF312768) (281 aa) fasta scores: E(): 4.6e-18, 30.36% id in 247 aa, and to Escherichia coli glutamine-binding periplasmic protein precursor GlnH or B0811 or Z1033 or ECS0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 1.1e-13, 30.55% id in 252 aa.
       0.717
atrC
Putative ABC transport system ATP-binding protein; Similar to Streptomyces coelicolor ATP-binding protein AtrC SWALL:Q9F3K7 (EMBL:AL391763) (253 aa) fasta scores: E(): 5.1e-58, 68% id in 250 aa, and to Rhizobium sp TAL1145 MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 1.9e-52, 60.78% id in 255 aa.
  
    0.645
DIP1289
Similar to Mycobacterium tuberculosis CDC1551 ABC transporter, ATP-binding protein MT1519 SWALL:AAK45784 (EMBL:AE007021) (542 aa) fasta scores: E(): 2.2e-114, 70.95% id in 544 aa, and to Bacillus halodurans ABC transporter BH2025 SWALL:Q9KBA3 (EMBL:AP001514) (539 aa) fasta scores: E(): 6.5e-33, 32.07% id in 505 aa.
      
 0.609
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.606
DIP1143
Putative ABC transport system membrane protein; Similar to Streptomyces coelicolor permease AtrB SWALL:Q9F3K6 (EMBL:AL391763) (316 aa) fasta scores: E(): 7.1e-49, 50.72% id in 276 aa, and to Rhizobium meliloti putative amino acid uptake ABC transporter permease protein RB0674 or SMB21095 SWALL:CAC49074 (EMBL:AL603644) (290 aa) fasta scores: E(): 3.5e-37, 42.96% id in 263 aa.
  
    0.478
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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