STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1163Putative membrane protein; No significant database matches. (181 aa)    
Predicted Functional Partners:
DIP1550
Hypothetical protein; No significant database matches.
  
     0.545
DIP1879
Putative DNA-biding protein; Similar to Mycobacterium tuberculosis hypothetical protein Rv2621c TR:O06191 (EMBL:Z95387) (224 aa) fasta scores: E(): 2.3e-05, 27.12% id in 188 aa, and to Deinococcus radiodurans conserved hypothetical protein DR0999 TR:Q9RvM8 (EMBL:AE001952) (225 aa) fasta scores: E(): 0.01, 23.62% id in 182 aa.
  
     0.501
DIP1875
Hypothetical protein; Poor database matches. C-terminal region is similar to Clostridium acetobutylicum hypothetical protein CAC0072 TR:AAK78058 (EMBL:AE007520) (77 aa) fasta scores: E(): 0.01, 29.16% id in 72 aa.
  
     0.475
tsnR
Putative rRNA methyltransferase; Similar to Mycobacterium tuberculosis TsnR or Rv1644 or MT1682 or MTCY06H11.08 SWALL:AAK45951 (EMBL:Z85982) (260 aa) fasta scores: E(): 2.4e-45, 52.85% id in 263 aa, and to Mycobacterium leprae putative rRNA methyltransferase TsnR or ML1397 SWALL:Q9CC19 (EMBL:AL583921) (259 aa) fasta scores: E(): 6.7e-45, 52.89% id in 259 aa, and to Bacillus halodurans rRNA methylase BH3112 SWALL:Q9K894 (EMBL:AP001517) (251 aa) fasta scores: E(): 3.2e-17, 35.24% id in 244 aa; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase T [...]
       0.466
DIP0976
Putative membrane protein; No significant database matches.
  
     0.442
DIP1876
Putative multicopper oxidase; C-terminus is similar to an internal regions of Neisseria gonorrhoeae major anaerobically induced outer membrane protein Pan 1 AniA SW:ANIA_NEIGO (Q02219) (392 aa) fasta scores: E(): 3.5e-18, 30.1% id in 299 aa, and Neisseria meningitidis nitrite reductase, major outer membrane copper-containing protein NMA1887 TR:Q9JTB8 (EMBL:AL162757) (386 aa) fasta scores: E(): 3e-18, 30.43% id in 299 aa.
  
     0.432
DIP1877
Putative membrane protein; No significant database matches to the full length CDS. C-terminus is similar to the N-terminal regions of Rhizobium meliloti hypothetical protein SMA0447 TR:AAK64892 (EMBL:AE007216) (373 aa) fasta scores: E(): 0.48, 22.94% id in 353 aa.
  
     0.407
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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