Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DIP1190Putative peptide transport protein; Similar to Bacillus subtilis hypothetical transporter YclF SWALL:YCLF_BACSU (SWALL:P94408) (492 aa) fasta scores: E(): 2e-53, 33.73% id in 495 aa, and to Neisseria meningitidis putative peptide transporter NMA0222 SWALL:Q9JWV5 (EMBL:AL162752) (485 aa) fasta scores: E(): 6.2e-47, 34.63% id in 488 aa. (498 aa)    
Predicted Functional Partners:
bioA
Similar to Corynebacterium glutamicum adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA SWALL:BIOA_CORGL (SWALL:P46395) (423 aa) fasta scores: E(): 7.2e-95, 55.68% id in 422 aa, and to Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or B0774 SWALL:BIOA_ECOLI (SWALL:P12995) (429 aa) fasta scores: E(): 3.5e-87, 52.98% id in 419 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.703
bioD2
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.676
DIP1193
Similar to Streptomyces coelicolor putative Na+/H+ antiporter SC4A10.04c SWALL:Q9S2Y0 (EMBL:AL109663) (528 aa) fasta scores: E(): 1.2e-47, 39.09% id in 532 aa, and to Rhizobium loti Na+/H+ antiporter MLL3064 SWALL:Q98H22 (EMBL:AP003001) (517 aa) fasta scores: E(): 9.6e-31, 28.62% id in 531 aa.
 
 
 0.554
DIP2324
Similar to Streptomyces coelicolor putative ABC transport system transmembrane protein SC10A9.10c SWALL:Q9AK94 (EMBL:AL583943) (379 aa) fasta scores: E(): 4.3e-17, 38.94% id in 380 aa. Lies alongside a putative ABC transporter ATP-binding subunit.
  
     0.406
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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