STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1190Putative peptide transport protein; Similar to Bacillus subtilis hypothetical transporter YclF SWALL:YCLF_BACSU (SWALL:P94408) (492 aa) fasta scores: E(): 2e-53, 33.73% id in 495 aa, and to Neisseria meningitidis putative peptide transporter NMA0222 SWALL:Q9JWV5 (EMBL:AL162752) (485 aa) fasta scores: E(): 6.2e-47, 34.63% id in 488 aa. (498 aa)    
Predicted Functional Partners:
bioA
Similar to Corynebacterium glutamicum adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA SWALL:BIOA_CORGL (SWALL:P46395) (423 aa) fasta scores: E(): 7.2e-95, 55.68% id in 422 aa, and to Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or B0774 SWALL:BIOA_ECOLI (SWALL:P12995) (429 aa) fasta scores: E(): 3.5e-87, 52.98% id in 419 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.725
bioD2
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.691
DIP1193
Similar to Streptomyces coelicolor putative Na+/H+ antiporter SC4A10.04c SWALL:Q9S2Y0 (EMBL:AL109663) (528 aa) fasta scores: E(): 1.2e-47, 39.09% id in 532 aa, and to Rhizobium loti Na+/H+ antiporter MLL3064 SWALL:Q98H22 (EMBL:AP003001) (517 aa) fasta scores: E(): 9.6e-31, 28.62% id in 531 aa.
 
 
 0.579
DIP1719
Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.506
DIP2324
Similar to Streptomyces coelicolor putative ABC transport system transmembrane protein SC10A9.10c SWALL:Q9AK94 (EMBL:AL583943) (379 aa) fasta scores: E(): 4.3e-17, 38.94% id in 380 aa. Lies alongside a putative ABC transporter ATP-binding subunit.
  
     0.406
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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