STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1222Putative secreted protein; No significant database matches. (60 aa)    
Predicted Functional Partners:
DIP1223
Putative secreted protein; Low similarity to Xylella fastidiosa hypothetical protein XF1327 SWALL:Q9PDQ2 (EMBL:AE003965) (189 aa) fasta scores: E(): 0.14, 25.23% id in 210 aa, and to Streptomyces coelicolor hypothetical 28.6 kDa protein 2SC10A7.34c SWALL:Q9ADM8 (EMBL:AL583945) (273 aa) fasta scores: E(): 0.23, 25.11% id in 215 aa; Belongs to the UPF0312 family.
       0.732
DIP1224
Conserved hypothetical protein; Similar to Mycobacterium tuberculosis CDC1551 hypothetical 13.2 kDa protein MT2109 SWALL:AAK46388 (EMBL:AE007062) (120 aa) fasta scores: E(): 5e-15, 43.92% id in 107 aa.
       0.711
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
       0.420
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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