STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1356Putative membrane protein; Similar to Bacillus subtilis hypothetical 84.1 kDa protein in hemY-gltT intergenic region YhgE SWALL:YHGE_BACSU (SWALL:P32399) (775 aa) fasta scores: E(): 5.1e-22, 25.23% id in 761 aa, and to Lactococcus lactis hypothetical protein YjaE or LL0882 SWALL:Q9CH57 (EMBL:AE006322) (799 aa) fasta scores: E(): 6.5e-20, 24.68% id in 790 aa. (673 aa)    
Predicted Functional Partners:
DIP1358
Similar to Streptomyces coelicolor putative TetR family transcriptional regulator SCF6.16 SWALL:Q9RJL5 (EMBL:AL121849) (194 aa) fasta scores: E(): 6.8e-06, 25.53% id in 188 aa, and to Rhizobium loti probable transcription regulator MLL1924 SWALL:Q98JI8 (EMBL:AP002998) (205 aa) fasta scores: E(): 1.1e-05, 25.77% id in 194 aa.
  
  
 0.927
DIP1357
Hypothetical protein; No significant database matches.
 
     0.872
DIP1355
Conserved hypothetical protein; Similar to Streptomyces coelicolor putative bifunctional protein SCBAC20F6.07 SWALL:Q9ADE3 (EMBL:AL590942) (800 aa) fasta scores: E(): 5e-37, 39% id in 700 aa, and to Streptomyces griseus hypothetical 77.7 kDa protein SWALL:BAB64333 (EMBL:AB056583) (724 aa) fasta scores: E(): 2.5e-32, 34.85% id in 680 aa.
       0.565
sdaB
L-serine dehydratase; Similar to Pseudomonas aeruginosa L-serine dehydratase SdaB or PA5379 SWALL:Q9HTI5 (EMBL:AE004950) (458 aa) fasta scores: E(): 3.5e-84, 53.99% id in 463 aa, and to Escherichia coli L-serine dehydratase 1 SdaA or B1814 SWALL:SDHL_ECOLI (SWALL:P16095) (454 aa) fasta scores: E(): 3e-70, 49.24% id in 461 aa; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.411
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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