Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DIP1370Conserved hypothetical protein; Similar to Corynebacterium glutamicum dipeptide-binding protein DciaE SWALL:O87329 (EMBL:AF038651) (502 aa) fasta scores: E(): 4e-83, 48.61% id in 434 aa, and to Mycobacterium tuberculosis hypothetical lipoprotein Rv2585c precursor or MT2662 or MTCY227.16 SWALL:YP85_MYCTU (SWALL:Q50636) (557 aa) fasta scores: E(): 7.1e-30, 29.09% id in 574 aa. (583 aa)    
Predicted Functional Partners:
DIP0325
Similar to Streptomyces coelicolor putative transport system permease protein SC4G2.19 TR:O86691 (EMBL:AL031371) (601 aa) fasta scores: E(): 1.9e-62, 37.01% id in 570 aa.
  
 
 0.849
DIP0513
Putative oligopeptide transport system (integral membrane and ATP-binding proteins); C-terminal region similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or STM1743 SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 3.2e-38, 42.07% id in 328 aa, and N-terminal region to Bacillus firmus dipeptide transport system permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: E(): 4.2e-32, 41.19% id in 267 aa.
  
 
 0.832
DIP2126
Similar to Streptomyces coelicolor putative transport permease protein SC9B5.20 TR:Q9ZBG0 (EMBL:AL035206) (312 aa) fasta scores: E(): 4.4e-32, 45.27% id in 254 aa, and to Bacillus subtilis dipeptide transport system permease protein DppC or DciAC SW:DPPC_BACSU (P26904) (320 aa) fasta scores: E(): 4.3e-23, 37.19% id in 242 aa.
  
 
 0.832
DIP0958
Similar to Streptomyces coelicolor putative peptide transport system integral membrane protein SC9E12.04 TR:Q9F351 (EMBL:AL391751) (305 aa) fasta scores: E(): 1.2e-56, 50.86% id in 289 aa, and to Bacillus subtilis oligopeptide transport system permease protein OppC or Spo0KC SW:OPPC_BACSU (P24139) (305 aa) fasta scores: E(): 5.5e-35, 36.86% id in 293 aa, and to Corynebacterium glutamicum ABC-type transporter, permease components CGL1992 SWALL:Q8NP33 (EMBL:AP005280) (333 aa) fasta scores: E(): 2.4e-98, 80.32% id in 310 aa.
  
 
 0.792
DIP1742
Similar to Rhizobium loti permease protein of oligopeptide ABC transporter MLR1189 TR:Q98L40 (EMBL:AP002996) (289 aa) fasta scores: E(): 1.8e-49, 52.1% id in 261 aa, and to Escherichia coli dipeptide transport system permease protein DppC or B3542 or Z4959 or ECS4422 SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 5e-36, 42.96% id in 270 aa.
  
 
 0.792
DIP2164
Similar to Streptomyces coelicolor putative transport system integral membrane protein SC4C2.14 TR:Q9EWP8 (EMBL:AL450432) (284 aa) fasta scores: E(): 4.4e-17, 32.567% id in 261 aa, and to Rhizobium loti ABC transporter, permease protein MLL7032 TR:Q987J0 (EMBL:AP003010) (283 aa) fasta scores: E(): 1.9e-14, 30.859% id in 256 aa.
  
 
 0.766
DIP2098
Putative secreted protein; No significant database matches.
  
     0.761
secD
Putative protein export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.752
DIP1556
Putative membrane protein; Low similarity to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein MT1645 TR:AAK45914 (EMBL:AE007029) (235 aa) fasta scores: E(): 1e-08, 28.64% id in 206 aa.
  
     0.736
DIP0959
Similar in its full length to Mycobacterium tuberculosis putative peptide ABC transporter ATP-binding protein Rv3663c or MTV025.011c TR:O69631 (EMBL:AL022121) (548 aa) fasta scores: E(): 4.5e-100, 58.27% id in 544 aa, and N-terminal region and C-termianl region both similar to Bacillus subtilis oligopeptide transport ATP-binding protein OppD or Spo0KD SW:OPPD_BACSU (P24136) (358 aa) fasta scores: E(): 3.1e-38, 46.56% id in 262 aa.
  
 
 0.733
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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