STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1663Probable MFS-transporter; Similar to Streptomyces viridifaciens valanimycin resistant protein VlmF TR:Q9LA76 (EMBL:AF148322) (402 aa) fasta scores: E(): 2.2e-10, 28.186% id in 408 aa, and to Pseudomonas aeruginosa probable MFS transporter PA5282 TR:Q9HTS2 (EMBL:AE004940) (389 aa) fasta scores: E(): 2.7e-06, 27.877% id in 391 aa. (419 aa)    
Predicted Functional Partners:
DIP1662
Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SCGD3.11c TR:Q9XA67 (EMBL:AL096822) (216 aa) fasta scores: E(): 3e-22, 35.122% id in 205 aa, and to Rhizobium meliloti putative GntR-family transcriptional regulator SMA0065 TR:AAK64690 (EMBL:AE007198) (230 aa) fasta scores: E(): 6.1e-11, 29.293% id in 198 aa.
 
     0.827
DIP1661
Similar to Neisseria meningitidis putative integral membrane protein NMA0370 TR:Q9JWH5 (EMBL:AL162753) (462 aa) fasta scores: E(): 8.6e-89, 59.488% id in 469 aa, and to Pasteurella multocida hypothetical protein PM0989 TR:Q9CM54 (EMBL:AE006138) (452 aa) fasta scores: E(): 3.3e-82, 52.402% id in 458 aa.
       0.490
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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