STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1741Similar to Rhizobium loti permease protein of oligopeptide ABC transporter MLR1187 TR:Q98L41 (EMBL:AP002996) (315 aa) fasta scores: E(): 1.3e-43, 42.2% id in 308 aa, and to Bacillus subtilis oligopeptide transport system permease protein AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): 2e-35, 35.93% id in 320 aa. (315 aa)    
Predicted Functional Partners:
DIP1740
Putative ABC transport system solute-binding secreted protein; Similar to Rhizobium loti dipeptide-binding protein of ABC transporter MLR1186 TR:Q98L42 (EMBL:AP002996) (497 aa) fasta scores: E(): 8e-52, 34.96% id in 449 aa.
   0.975
DIP1742
Similar to Rhizobium loti permease protein of oligopeptide ABC transporter MLR1189 TR:Q98L40 (EMBL:AP002996) (289 aa) fasta scores: E(): 1.8e-49, 52.1% id in 261 aa, and to Escherichia coli dipeptide transport system permease protein DppC or B3542 or Z4959 or ECS4422 SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 5e-36, 42.96% id in 270 aa.
  
 0.973
DIP1743
Similar to Streptomyces coelicolor putative oligopeptide ABC transporter ATP-binding protein SCBAC1A6.35c TR:Q9ADF2 (EMBL:AL589708) (585 aa) fasta scores: E(): 1.2e-33, 44.29% id in 526 aa.
  
 0.944
DIP2126
Similar to Streptomyces coelicolor putative transport permease protein SC9B5.20 TR:Q9ZBG0 (EMBL:AL035206) (312 aa) fasta scores: E(): 4.4e-32, 45.27% id in 254 aa, and to Bacillus subtilis dipeptide transport system permease protein DppC or DciAC SW:DPPC_BACSU (P26904) (320 aa) fasta scores: E(): 4.3e-23, 37.19% id in 242 aa.
 
 0.889
DIP0958
Similar to Streptomyces coelicolor putative peptide transport system integral membrane protein SC9E12.04 TR:Q9F351 (EMBL:AL391751) (305 aa) fasta scores: E(): 1.2e-56, 50.86% id in 289 aa, and to Bacillus subtilis oligopeptide transport system permease protein OppC or Spo0KC SW:OPPC_BACSU (P24139) (305 aa) fasta scores: E(): 5.5e-35, 36.86% id in 293 aa, and to Corynebacterium glutamicum ABC-type transporter, permease components CGL1992 SWALL:Q8NP33 (EMBL:AP005280) (333 aa) fasta scores: E(): 2.4e-98, 80.32% id in 310 aa.
  
 0.877
DIP2164
Similar to Streptomyces coelicolor putative transport system integral membrane protein SC4C2.14 TR:Q9EWP8 (EMBL:AL450432) (284 aa) fasta scores: E(): 4.4e-17, 32.567% id in 261 aa, and to Rhizobium loti ABC transporter, permease protein MLL7032 TR:Q987J0 (EMBL:AP003010) (283 aa) fasta scores: E(): 1.9e-14, 30.859% id in 256 aa.
 
  
 0.851
DIP0513
Putative oligopeptide transport system (integral membrane and ATP-binding proteins); C-terminal region similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or STM1743 SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 3.2e-38, 42.07% id in 328 aa, and N-terminal region to Bacillus firmus dipeptide transport system permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: E(): 4.2e-32, 41.19% id in 267 aa.
 
 0.837
DIP2162
Similar to Streptomyces coelicolor putative secreted solute-binding protein SC4C2.12 TR:Q9EWQ0 (EMBL:AL450432) (528 aa) fasta scores: E(): 4.7e-23, 29.923% id in 518 aa, and to Rhizobium loti ABC transporter, binding protein MLL5127 TR:Q98CJ3 (EMBL:AP003005) (528 aa) fasta scores: E(): 1.4e-22, 27.921% id in 505 aa. Note: Contains a putative twin-arginine translocation (TAT) system recognition motif (RRDFLK) at the N-terminal region.
 
   0.806
DIP0956
Putative peptide transport system secreted protein; Similar to Corynebacterium glutamicum ABC-type transporter, periplasmic component CGL1990 SWALL:Q8NP35 (EMBL:AP005280) (534 aa) fasta scores: E(): 7.8e-143, 66.79% id in 533 aa, and to Mycobacterium tuberculosis putative peptide transport system secreted peptide-binding protein Rv3666c or MTV025.014c or MT3767 SWALL:O69634 (EMBL:AL022121) (541 aa) fasta scores: E(): 6.8e-75, 49.06% id in 534 aa, and to Bacillus subtilis dipeptide-binding protein precursor DppE or DciAE SWALL:DPPE_BACSU (SWALL:P26906) (543 aa) fasta scores: E(): 1.2e-1 [...]
 
  
 0.791
DIP0324
Putative secreted protein; Similar to Streptomyces coelicolor putative solute-binding lipoprotein SC4G2.18 TR:O86690 (EMBL:AL031371) (503 aa) fasta scores: E(): 1.3e-64, 39.63% id in 497 aa.
 
 
 0.780
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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