Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DIP1834Putative phage protein; Similar to Bacteriophage r1t ORF40 TR:Q38126 (EMBL:U38906) (213 aa) fasta scores: E(): 0.019, 25.904% id in 166 aa, and to Escherichia coli O157:H7 putative tail length tape measure protein precursor ECS2949 TR:BAB36372 (EMBL:AP002560) (881 aa) fasta scores: E(): 0.025, 27.698% id in 278 aa. (521 aa)    
Predicted Functional Partners:
DIP1835
Hypothetical protein; No significant database matches.
       0.775
DIP1836
Contains collagen-like Pro/Gly repeat; Similar to Gallus gallus collagen alpha 1 Col3A1 SW:CA13_CHICK (P12105) (1262 aa) fasta scores: E(): 3.8e-13, 48.023% id in 177 aa.
       0.773
DIP1824
Similar to Mycobacteriophage TM4 putative terminase gp4 TR:Q9ZX73 (EMBL:AF068845) (474 aa) fasta scores: E(): 2.6e-13, 24.364% id in 472 aa, and to Bacteriophage HK97 terminase large subunit 2 TR:Q9MCT1 (EMBL:AF069529) (504 aa) fasta scores: E(): 0.019, 23.741% id in 278 aa.
 
     0.710
DIP1831
Conserved hypothetical protein; Similar to Bifidobacterium longum NCC2705 hypothetical protein BL0379 SWALL:AAN24215 (EMBL:AE014655) (140 aa) fasta scores: E(): 1.7e-05, 34.14% id in 123 aa.
       0.619
DIP1832
Putative phage protein; Similar to Bacteriophage phi-C31 gp40 40 TR:Q9ZXA7 (EMBL:AJ006589) (143 aa) fasta scores: E(): 1.3e-05, 25.362% id in 138 aa.
       0.618
DIP2153
Similar to Bacteriophage phi-105 holin TR:Q38456 (EMBL:L35561) (124 aa) fasta scores: E(): 5.4e-14, 41.22% id in 114 aa, and to Escherichia coli O157:H7 putative holin protein of prophage cp-933c Z1852 or ECS1595 TR:AAG55949 (EMBL:AE005328) (129 aa) fasta scores: E(): 1.7e-07, 40.77% id in 103 aa.
 
    0.618
DIP1830
Hypothetical protein; No significant database matches.
       0.558
DIP1833
Putative phage protein; Similar to Bacteriophage Mu hypothetical protein gp14 14 or e15 SW:VG14_BPMU (Q38492) (100 aa) fasta scores: E(): 0.86, 32.955% id in 88 aa.
       0.558
DIP0736
Putative protease; C-terminal region similar to Drosophila erecta trypsin zeta precursor Try-ZetA SW:TRYZ_DROER (P54630) (281 aa) fasta scores: E(): 0.17, 26.03% id in 242 aa.
  
     0.545
DIP1828
Similar to Mycobacterium tuberculosis hypothetical 18.5 kDa protein Rv1577c or MTCY336.27 TR:O06613 (EMBL:Z95586) (170 aa) fasta scores: E(): 4.4e-06, 34.507% id in 142 aa, and to Mycobacterium tuberculosis hypothetical 19.3 kDa protein Rv2651c or MTCY441.20c TR:P71948 (EMBL:Z80225) (177 aa) fasta scores: E(): 4.5e-06, 35.664% id in 143 aa.
     
 0.545
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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