STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmJ50S ribosomal protein L36; Similar to Bacillus stearothermophilus 50S ribosomal protein L36 RpmJ SW:RL36_BACST (P07841) (37 aa) fasta scores: E(): 0.0052, 50% id in 40 aa, and to Streptomyces coelicolor putative ribosomal protein L36 SC8B3.03c TR:CAC44182 (EMBL:AL593822) (40 aa) fasta scores: E(): 2.3e-12, 85% id in 40 aa. (40 aa)    
Predicted Functional Partners:
rpmG
Similar to Mycobacterium tuberculosis 50S ribosomal protein L33 type 1 RpmG1 or RpmG or Rv2057c or MT2117.1 or MTCY63A.03 SW:R331_MYCTU (O86356) (54 aa) fasta scores: E(): 7e-18, 75.92% id in 54 aa; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.991
rpmB2
Similar to Mycobacterium tuberculosis 50S ribosomal protein L28-2 RpmB2 or Rv2058c or MT2118 or MTCY63A.02 SW:R28B_MYCTU (O86357) (78 aa) fasta scores: E(): 7.7e-22, 70.51% id in 78 aa; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.990
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.988
rpmF
Similar to Mycobacterium leprae 50S ribosomal protein L32 RpmF or ML0173 SW:RL32_MYCLE (Q9CD69) (57 aa) fasta scores: E(): 4e-11, 57.14% id in 56 aa; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.988
rpmE
Similar to Streptomyces coelicolor 50S ribosomal protein L31 type B-2 RpmE3 or SCE9.34c TR:Q9X8K6 (EMBL:AL049841) (84 aa) fasta scores: E(): 1.4e-18, 60.75% id in 79 aa.
  
 
 0.983
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.979
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.979
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 
 0.979
rpmC
Similar to Mycobacterium bovis 50S ribosomal protein L29 RpmC SW:RL29_MYCBO (O06050) (75 aa) fasta scores: E(): 1.1e-12, 67.16% id in 67 aa; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.979
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
 0.979
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.