STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1896Putative transposase (partial); Similar to the C-terminal regions of Saccharopolyspora sp. putative transposase SapX TR:O52713 (EMBL:AF045021) (103 aa) fasta scores: E(): 0.00038, 45.83% id in 48 aa, and Streptomyces lividans similar to Orf1 of the IS3 family TR:Q54335 (EMBL:U50076) (103 aa) fasta scores: E(): 0.076, 47.61% id in 42 aa. (56 aa)    
Predicted Functional Partners:
DIP1897
Putative transposase (partial); Similar to N-terminal region of Corynebacterium jeikeium transposase B TnpB TR:AAK67710 (EMBL:AY036070) (302 aa) fasta scores: E(): 4.1e-08, 40% id in 100 aa. Probable gene remnant.
  
    0.649
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.