STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1897Putative transposase (partial); Similar to N-terminal region of Corynebacterium jeikeium transposase B TnpB TR:AAK67710 (EMBL:AY036070) (302 aa) fasta scores: E(): 4.1e-08, 40% id in 100 aa. Probable gene remnant. (109 aa)    
Predicted Functional Partners:
DIP0049
Putative transposase (partial); Similar to Corynebacterium jeikeium transposase B TnpB TR:AAK67710 (EMBL:AY036070) (302 aa) fasta scores: E(): 1.2e-06, 45.45% id in 55 aa, and to Escherichia coli O157:H7 EDL933 partial transposase Z1207 TR:AAG55352 (EMBL:AE005276) (82 aa) fasta scores: E(): 5.2e-05, 38% id in 50 aa.
  
     0.771
DIP1896
Putative transposase (partial); Similar to the C-terminal regions of Saccharopolyspora sp. putative transposase SapX TR:O52713 (EMBL:AF045021) (103 aa) fasta scores: E(): 0.00038, 45.83% id in 48 aa, and Streptomyces lividans similar to Orf1 of the IS3 family TR:Q54335 (EMBL:U50076) (103 aa) fasta scores: E(): 0.076, 47.61% id in 42 aa.
  
    0.649
DIP0674
Similar to Bradyrhizobium japonicum probable Ni/Fe-hydrogenase B-type cytochrome subunit HupC SW:CYBH_BRAJA (P21960) (244 aa) fasta scores: E(): 2.3e-16, 32.65% id in 245 aa, and to Escherichia coli probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit HyaC or B0974 or Z1391 or ECS1130 SW:CYBH_ECOLI (P19929) (235 aa) fasta scores: E(): 6e-13, 30.04% id in 213 aa and N-terminal region similar to Homo sapiens vacuolar proton translocating ATPase 116 kDa subunit A isoform 2 SW:VPP2_HUMAN (Q9Y487) blast scores: E(): 2.6, score: 34 30% id.
  
     0.402
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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