STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1901Putative ABC transport system ATP-binding protein; Similar to Mycobacterium tuberculosis Rv1620c TR:O06137 (EMBL:Z95554) (576 aa) fasta scores: E(): 2.2e-20, 38.71% id in 527 aa, and to Caulobacter crescentus ABC transporter, ATP-binding protein CC0761 TR:Q9AA45 (EMBL:AE005752) (546 aa) fasta scores: E(): 5.8e-16, 28.73% id in 529 aa. (515 aa)    
Predicted Functional Partners:
DIP1900
Similar to Bacillus subtilis transport ATP-binding protein CydC SW:CYDC_BACSU (P94366) (567 aa) fasta scores: E(): 2.3e-21, 31.8% id in 544 aa, and to Vibrio cholerae transport ATP-binding protein VC1181 TR:Q9KSS5 (EMBL:AE004198) (595 aa) fasta scores: E(): 2.5e-19, 27.76% id in 551 aa. CDS is extended at the N-terminus in comparison to similar proteins. Possible alternative translational start site.
 
0.999
DIP1899
Similar to Escherichia coli cytochrome D ubiquinol oxidase subunit II CydB SW:CYDB_ECOLI (P11027) (379 aa) fasta scores: E(): 9.8e-28, 37.63% id in 364 aa, and to Corynebacterium glutamicum cytochrome BD-type menaquinol oxidase subunit II CydB TR:Q9KWL7 (EMBL:AB035086) (334 aa) fasta scores: E(): 3.4e-63, 54.26% id in 328 aa.
 
  
 0.998
DIP1898
Putative cytochrome ubiquinol oxidase subunit; N-terminus is similar to the N-terminal region of Escherichia coli cytochrome D ubiquinol oxidase subunit I CydA SW:CYDA_ECOLI (P11026) (522 aa) fasta scores: E(): 5.2e-47, 37.11% id in 485 aa. Similar to Mycobacterium tuberculosis probable cytochrome D ubiquinol oxidase subunit Rv1623c TR:O06140 (EMBL:Z95554) (485 aa) fasta scores: E(): 4.5e-121, 62.11% id in 483 aa.
 
  
 0.997
DIP0014
Putative membrane protein; Low similarity to Staphylococcus aureus subsp aureus N315 SA0639 protein TR:Q99VT7 (EMBL:AP003131) (543 aa) fasta scores: E(): 3e-23, 25.56% id in 485 aa.
 
  
0.874
DIP1357
Hypothetical protein; No significant database matches.
  
  
 0.698
DIP0961
Similar to Bacillus subtilis homologous to many ATP-binding transport proteins YxlF TR:P94374 (EMBL:D83026) (295 aa) fasta scores: E(): 6.4e-12, 31.22% id in 221 aa, and to Escherichia coli, and putative aliphatic sulfonates transport ATP-binding protein SsuB or B0933 or Z1281 or ECS1016 SW:SSUB_ECOLI (P38053) (255 aa) fasta scores: E(): 3.3e-08, 31.25% id in 208 aa.
  
     0.435
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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