STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1942Putative TetR-family regulatory protein; Similar to Synechocystis sp hypothetical protein SLR0895 TR:Q55363 (EMBL:D64003) (187 aa) fasta scores: E(): 6.6e-05, 24% id in 175 aa, and to Rhizobium meliloti hypothetical protein SMC01522 TR:CAC46995 (EMBL:AL591790) (186 aa) fasta scores: E(): 7.7e-05, 25.88% id in 170 aa. (206 aa)    
Predicted Functional Partners:
DIP1941
Putative membrane protein; Similar to Salmonella typhimurium methyl viologen resistance protein SmvA SW:SMVA_SALTY (P37594) (496 aa) fasta scores: E(): 4e-41, 33.4% id in 488 aa, and to Pseudomonas aeruginosa probable MFS transporter PA1282 TR:Q9I462 (EMBL:AE004557) (501 aa) fasta scores: E(): 1.2e-55, 41.17% id in 493 aa.
 
     0.908
DIP1940
Hypothetical protein; Doubtful CDS. No strong consensus RBS usptream. No significant database matches.
       0.693
DIP1943
Xanthine/uracil permeases family protein; Similar to Streptomyces coelicolor putative permease SC9G1.04 TR:Q9RKW2 (EMBL:AL132997) (462 aa) fasta scores: E(): 5.6e-61, 41.93% id in 465 aa, and to Escherichia coli putative purine permease YgfU SW:YGFU_ECOLI (Q46821) (482 aa) fasta scores: E(): 9e-55, 38.08% id in 449 aa.
       0.601
DIP1939
Putative membrane protein; Similar to the N-terminus of Thermotoga maritima conserved hypothetical protein TM1156 TR:Q9X0P0 (EMBL:AE001773) (129 aa) fasta scores: E(): 5.1e-05, 39.34% id in 61 aa, and to the full length Bacillus subtilis hypothetical protein YvlC TR:O34719 (EMBL:AF017113) (65 aa) fasta scores: E(): 0.00018, 41.37% id in 58 aa.
 
     0.546
DIP0734
Putative membrane protein; No significant database matches.
  
     0.535
DIP2108
Putative integral membrane protein; Weakly similar to many eg. Pseudomonas aeruginosa sodium/glutamate symporter GltS or PA3176 TR:Q9HZ58 (EMBL:AE004741) (404 aa) fasta scores: E(): 2.2e-06, 23.83% id in 365 aa, and to Escherichia coli sodium/glutamate symport carrier protein GltS or GltC or B3653 SW:GLTS_ECOLI (P19933) (401 aa) fasta scores: E(): 0.097, 22.36% id in 398 aa.
  
     0.470
DIP1937
Putative exported protein; Poor database matches. Similar to the C-terminal region of Bacillus subtilis extracellular metalloprotease precursor Mpr SW:MPR_BACSU (P39790) (313 aa) fasta scores: E(): 8.9, 23.76% id in 202 aa.
       0.467
DIP1938
Putative membrane protein; No significant database matches.
       0.467
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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