STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP1990Putative ABC transport system, ATP-binding protein; Similar to Rhizobium sp nodulation ATP-binding protein I NodI SW:NODI_RHIS3 (P72335) (304 aa) fasta scores: E(): 6.6e-22, 35.94% id in 306 aa, and to Streptomyces coelicolor putative ABC transporter ATP-binding subunit SCC30.13 TR:Q9L008 (EMBL:AL352972) (308 aa) fasta scores: E(): 2.8e-31, 39.34% id in 305 aa. (307 aa)    
Predicted Functional Partners:
DIP1989
Putative membrane protein; Weakly similar to Streptomyces coelicolor putative ABC transporter integral membrane protein SCC30.14 TR:Q9L007 (EMBL:AL352972) (238 aa) fasta scores: E(): 1.9e-11, 28.91% id in 249 aa, and to Bacillus cereus hypothetical protein YvfS TR:Q9L4F5 (EMBL:AJ243712) (239 aa) fasta scores: E(): 3.1e-08, 23.79% id in 248 aa.
 
    0.969
DIP2144
Putative ABC transport system, ATP-binding subunit; Similar to many eg. Bacillus licheniformis bacitracin transport ATP-binding protein BcrA SW:BCRA_BACLI (P42332) (306 aa) fasta scores: E(): 2.7e-22, 35.01% id in 277 aa.
 
    
0.854
DIP2143
Putative ABC transport system integral membrane protein; Weakly similar to Bacillus subtilis hypothetical YxlG TR:P94375 (EMBL:D83026) (259 aa) fasta scores: E(): 1.2, 24.72% id in 182 aa, and to Rhizobium loti Mll2378 protein TR:Q98IJ2 (EMBL:AP002999) (339 aa) fasta scores: E(): 1.3, 26.98% id in 252 aa. Lies alongside a putative ABC transporter ATP-binding subunit.
  
 
 0.589
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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