Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DIP2040Putative membrane protein; Similar to Mycobacterium leprae probable conserved membrane protein ML1504 SWALL:Q9CBX0 (EMBL:AL583922) (430 aa) fasta scores: E(): 1.8e-10, 31.8% id in 349 aa, and to Mycobacterium tuberculosis hypothetical 47.1 kDa protein Rv1159 or MT1195 or MTCI65.26 SWALL:O06557 (EMBL:Z95584) (431 aa) fasta scores: E(): 4.3e-10, 31.66% id in 360 aa. (386 aa)    
Predicted Functional Partners:
DIP2038
Hypothetical protein; Doubtful CDS. No strong consensus RBS usptream. No significant database matches.
       0.773
DIP2039
Hypothetical protein; No significant database matches.
       0.773
DIP2037
Putative peptidase; Similar to Streptomyces coelicolor putative peptidase SCG22.20 SWALL:Q9K425 (EMBL:AL359779) (451 aa) fasta scores: E(): 5.7e-70, 44.19% id in 448 aa, and to Mycobacterium leprae hypothetical 46.6 kDa protein ML1193 or MLCB458.08 SWALL:Q9X7E4 (EMBL:AL049478) (442 aa) fasta scores: E(): 1.1e-52, 37.41% id in 441 aa.
       0.746
DIP1462
Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 23.6 kDa protein SC4G6.14 TR:Q9S2U0 (EMBL:AL096884) (211 aa) fasta scores: E(): 1.4e-09, 31.86% id in 204 aa, and to Mycobacterium tuberculosis hypothetical 24.0 kDa protein Rv1929c or MTCY09F9.35 TR:P95285 (EMBL:Z84498) (214 aa) fasta scores: E(): 4.3e-07, 32.71% id in 217 aa.
  
     0.634
DIP0275
Putative membrane protein; Similar to Streptomyces coelicolor putative integral membrane protein 2SCI34.05 TR:Q9EWX4 (EMBL:AL445403) (396 aa) fasta scores: E(): 1.3e-08, 28.77% id in 358 aa.
 
     0.606
DIP1862
Conserved hypothetical protein; Poor database matches. Similar to Streptomyces coelicolor hypothetical protein SC1B5.06c TR:O69834 (EMBL:AL023517) (249 aa) fasta scores: E(): 9e-23, 41.42% id in 210 aa. C-terminal region is similar to Pyrococcus horikoshii hypothetical protein PH1539 SW:YF39_PYRHO (O74017) (121 aa) fasta scores: E(): 0.0025, 36.84% id in 95 aa.
  
     0.578
DIP2293
Similar to Streptomyces coelicolor putative transmembrane protein SCH24.24 SWALL:Q9X8T8 (EMBL:AL049826) (502 aa) fasta scores: E(): 7.8e-37, 36.2% id in 453 aa.
 
     0.570
DIP0314
Putative membrane protein; Similar to Mycobacterium tuberculosis putative transmembrane protein Rv3658c or MTV025.006c TR:O69626 (EMBL:AL022121) (266 aa) fasta scores: E(): 6.1e-17, 36.52% id in 230 aa.
  
     0.551
DIP0103
Similar to Mycobacterium leprae hypothetical protein ML2114 TR:Q9CBE3 (EMBL:AL583924) (56 aa) fasta scores: E(): 1.7e-05, 52.08% id in 48 aa.
  
     0.430
DIP0606
Conserved hypothetical protein; Similar to Corynebacterium glutamicum hypothetical 31.3 kDa protein TR:Q93QX1 (EMBL:AF159510) (287 aa) fasta scores: E(): 3.9e-56, 51.52% id in 295 aa.
  
     0.416
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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