STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP2081Similar to Escherichia coli O157:H7 transcriptional regulator LldR or Z5031 or ECS4482 SWALL:BAB37905 (EMBL:AE005588) (258 aa) fasta scores: E(): 1.9e-14, 33.48% id in 224 aa, and to Pseudomonas aeruginosa transcriptional regulator GlcC or PA5356 SWALL:Q9HTK2 (EMBL:AE004947) (251 aa) fasta scores: E(): 1e-13, 32.36% id in 241 aa. (232 aa)    
Predicted Functional Partners:
DIP1662
Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SCGD3.11c TR:Q9XA67 (EMBL:AL096822) (216 aa) fasta scores: E(): 3e-22, 35.122% id in 205 aa, and to Rhizobium meliloti putative GntR-family transcriptional regulator SMA0065 TR:AAK64690 (EMBL:AE007198) (230 aa) fasta scores: E(): 6.1e-11, 29.293% id in 198 aa.
  
  
 0.758
DIP0011
Putative regulatory protein; Similar to Escherichia coli glc operon transcriptional activator GlcC or B2980 SW:GLCC_ECOLI (P52072) (254 aa) fasta scores: E(): 1.2e-05, 23.5% id in 234 aa.
  
     0.751
DIP0517
Putative GntR family regulatory protein; Similar to Escherichia coli galactonate operon transcriptional repressor DgoR or B3694/B3695 SW:DGOR_ECOLI (P31460) (229 aa) fasta scores: E(): 8.4e-09, 23.11% id in 199 aa.
  
     0.742
DIP2241
Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator SC7E4.28c TR:Q9K492 (EMBL:AL359214) (254 aa) fasta scores: E(): 7.3e-21, 34.82% id in 224 aa, and to Escherichia coli fatty acyl responsive regulator FarR or G30 or B0730 SW:FARR_ECOLI (P13669) (240 aa) fasta scores: E(): 6.4e-14, 30.93% id in 236 aa.
  
    0.691
DIP2080
Similar to Synechocystis sp hypothetical 48.5 kDa protein SLR1342 SWALL:P74079 (EMBL:D90912) (445 aa) fasta scores: E(): 2.4e-39, 34.19% id in 462 aa.
 
     0.676
DIP2079
Similar to many putative oxidoreductases e.g. Rhizobium meliloti putative oxidoreductase protein R01702 or SMC00274 SWALL:CAC46281 (EMBL:AL591788) (295 aa) fasta scores: E(): 7.6e-30, 41.4% id in 285 aa, and to Escherichia coli hypothetical oxidoreductase YgbJ or B2736 SWALL:YGBJ_ECOLI (SWALL:Q46888) (302 aa) fasta scores: E(): 2e-26, 36.08% id in 291 aa.
 
     0.626
DIP1126
Similar to Mycobacterium tuberculosis probable transcriptional regulator Rv2989 or MT3067 or MTV012.03 SWALL:AAK47396 (EMBL:AL021287) (267 aa) fasta scores: E(): 8.6e-39, 48.26% id in 230 aa, and to Streptomyces coelicolor putative transcriptional regulator SC1C2.33c SWALL:O86533 (EMBL:AL031124) (238 aa) fasta scores: E(): 7.2e-31, 42.24% id in 232 aa.
  
  
 0.595
accDA
Similar to Corynebacterium glutamicum putative carboxyltransferase subunit of acetyl-CoA carboxylase AccDA TR:CAC42827 (EMBL:Y17592) (491 aa) fasta scores: E(): 8.9e-58, 55.31% id in 499 aa, and to Escherichia coli acetyl-coenzyme A carboxylase carboxyl transferase subunit beta AccD or DedB or Usg or B2316 or Z3578 or ECS3200 SW:ACCD_ECOLI (P08193) (304 aa) fasta scores: E(): 8.6e-22, 34.89% id in 235 aa.
  
  
 0.455
DIP2078
Putative membrane transport protein; Similar to Corynebacterium glutamicum gluconate permease GntP SWALL:Q9AL75 (EMBL:AJ296014) (463 aa) fasta scores: E(): 3.8e-50, 36.3% id in 449 aa, and to Escherichia coli Gnt-II system L-idonate transporter IdnT or GntW or B4265 SWALL:IDNT_ECOLI (SWALL:P39344) (439 aa) fasta scores: E(): 3.4e-44, 31.98% id in 444 aa, and to Escherichia coli high-affinity gluconate transporter GntP or B4321 or Z5919 or ECS5280 SWALL:GNTP_ECOLI (SWALL:P39373) (447 aa) fasta scores: E(): 5.1e-39, 31.49% id in 435 aa.
     
 0.413
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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