STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP2083Pseudogene. Similar to Rhizobium meliloti putative amino acid dehydrogenase transmembrane protein R03117 or SMC03265 SWALL:Q92LE8 (EMBL:AL591793) (429 aa) fasta scores: E(): 3.7e-15, 26.82% id in 410 aa, and to Pseudomonas aeruginosa D-amino acid dehydrogenase, small subunit DadA or PA5304 SWALL:Q9HTQ0 (EMBL:AE004943) (432 aa) fasta scores: E(): 4.5e-14, 27.45% id in 408 aa. Presents a frameshift at residue 60. (402 aa)    
Predicted Functional Partners:
DIP0989
Putative hydrolase; Similar to the N-terminal region of Pichia jadinii beta-D-fructofuranoside fructohydrolase Inv1 TR:O94224 (EMBL:Y12659) (533 aa) fasta scores: E(): 1.5e-09, 26.33% id in 300 aa, and to the C-terminal region of Pseudomonas mucidolens endo-inulinase TR:Q9RGC0 (EMBL:AF141320) (776 aa) fasta scores: E(): 3.6e-07, 21.77% id in 473 aa.
  
     0.480
DIP1020
Similar to Streptomyces coelicolor putative integral membrane protein scf42.06C TR:Q9L2K7 (EMBL:AL137165) (164 aa) fasta scores: E(): 0.0052, 31.54% id in 168 aa, and to Rhizobium meliloti hypothetical transmembrane protein Smc01456 smc01456 TR:CAC46718 (EMBL:AL591789) (144 aa) fasta scores: E(): 0.27, 23.61% id in 144 aa.
  
     0.456
DIP0565
Hypothetical protein; No significant database matches. High concentration of alanine, glycine and proline residues.
  
     0.419
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.