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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcrYConserved hypothetical protein (pseudogene); Pseudogene. Highly similar to Corynebacterium striatum GcrY SWALL:Q9FB53 (EMBL:AF024666) (952 aa) fasta scores: E(): 1e-186, 84.13% id in 517 aa, and to Deinococcus radiodurans DNA modification methyltransferase-related protein DR2267 SWALL:Q9RS60 (EMBL:AE002059) (840 aa) fasta scores: E(): 8.1e-16, 26.91% id in 509 aa. Presents a frameshift at residue 260 with two other CDSs inserted at this point. (160 aa)    
Predicted Functional Partners:
DIP0026
Putative transposase (partial); Similar to Streptococcus mutans transposase (fragment) TR:Q9ZHF4 (EMBL:AF065413) (75 aa) fasta scores: E(): 3.5e-11, 47.22% id in 72 aa.
  
     0.710
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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