STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP2121Conserved hypothetical protein; Some similarity to integral membrane sensory proteins though DIP2121 does not appear to be a membrane protein. Similar to Rhodobacter capsulatus potential sensory protein TR:O68073 (EMBL:AF010496) (416 aa) fasta scores: E(): 1.6e-11, 27.93% id in 426 aa, and to Escherichia coli ORFI protein TR:Q56321 (EMBL:X61367) (525 aa) fasta scores: E(): 2.2e-09, 25.78% id in 446 aa, and to Escherichia coli aerotaxis receptor Aer or Air or B3072 SW:AER_ECOLI (P50466) (506 aa) fasta scores: E(): 1e-08, 25.29% id in 423 aa. (434 aa)    
Predicted Functional Partners:
DIP2122
Similar to Streptomyces coelicolor integral membrane protein SCF6.09 TR:Q9RJL9 (EMBL:AL121849) (363 aa) fasta scores: E(): 3.1e-49, 44.27% id in 332 aa, and to Escherichia coli putative permease B2493 or Z3755 or ECS3355 SW:PERM_ECOLI (P77406) (353 aa) fasta scores: E(): 1.7e-18, 27.89% id in 337 aa.
       0.536
DIP0599
Similar to Streptomyces coelicolor putative two-component system sensor kinase SCD63A.02 TR:Q9KY73 (EMBL:AL356832) (430 aa) fasta scores: E(): 3e-12, 37.09% id in 434 aa.
   
 
 0.456
DIP0063
Putative two-component system sensor protein; Similar to Escherichia coli sensor protein BaeS or B2078 SW:BAES_ECOLI (P30847) (467 aa) fasta scores: E(): 1.8e-28, 33.333% id in 372 aa.
 
 
 
 0.420
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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