STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP2143Putative ABC transport system integral membrane protein; Weakly similar to Bacillus subtilis hypothetical YxlG TR:P94375 (EMBL:D83026) (259 aa) fasta scores: E(): 1.2, 24.72% id in 182 aa, and to Rhizobium loti Mll2378 protein TR:Q98IJ2 (EMBL:AP002999) (339 aa) fasta scores: E(): 1.3, 26.98% id in 252 aa. Lies alongside a putative ABC transporter ATP-binding subunit. (259 aa)    
Predicted Functional Partners:
DIP2144
Putative ABC transport system, ATP-binding subunit; Similar to many eg. Bacillus licheniformis bacitracin transport ATP-binding protein BcrA SW:BCRA_BACLI (P42332) (306 aa) fasta scores: E(): 2.7e-22, 35.01% id in 277 aa.
  
 
 0.922
DIP2146
Putative integral membrane protein; No significant database matches.
       0.842
DIP2147
Similar to Streptomyces coelicolor conserved hypothetical protein SCE20.33c TR:Q9RD92 (EMBL:AL136058) (125 aa) fasta scores: E(): 3e-12, 44.79% id in 96 aa, and to Caulobacter crescentus hypothetical protein Cc3408 TR:Q9A2Z8 (EMBL:AE006001) (108 aa) fasta scores: E(): 2.9e-10, 42.26% id in 97 aa.
       0.842
DIP2145
Putative integral membrane protein; No significant database matches.
       0.805
DIP0090
ABC transport system ATP-binding protein; Similar to Lactococcus lactis NisF TR:Q48597 (EMBL:U17255) (225 aa) fasta scores: E(): 1.3e-25, 43.8% id in 226 aa, and to Staphylococcus epidermidis putative ABC transporter subunit EpiF TR:Q54002 (EMBL:U77778) (231 aa) fasta scores: E(): 7.1e-21, 38.15% id in 228 aa.
  
 
 0.589
DIP0460
Similar to Streptomyces coelicolor putative ABC transporter ATP-binding subunit 2SC6G5.39c TR:Q9K4B6 (EMBL:AL359152) (346 aa) fasta scores: E(): 9.6e-39, 44.02% id in 318 aa.
  
 
 0.589
DIP0461
Low similarity to Streptomyces coelicolor putative integral membrane protein SCBAC17A6.12c TR:CAC44657 (EMBL:AL596248) (387 aa) fasta scores: E(): 0.021, 30.04% id in 213 aa.
  
 
 0.589
DIP0755
Putative lantibiotic ABC-transport system, ATP-binding protein; Similar to Bacillus subtilis SpaF TR:Q45404 (EMBL:U09819) (247 aa) fasta scores: E(): 2.2e-22, 42.991% id in 214 aa, and to Corynebacterium jeikeium BlsD TR:AAK94047 (EMBL:AF401314) (301 aa) fasta scores: E(): 2.5e-22, 33.106% id in 293 aa.
  
 
 0.589
DIP1298
Similar to Mycobacterium tuberculosis ABC-transporter ATP-binding protein Rv1458c or MTV007.05c SWALL:O53149 (EMBL:AL021184) (313 aa) fasta scores: E(): 2e-48, 50.32% id in 304 aa, and to Streptomyces peucetius daunorubicin resistance ATP-binding protein DrrA SWALL:DRRA_STRPE (SWALL:P32010) (330 aa) fasta scores: E(): 1.5e-24, 34.09% id in 305 aa.
  
 
 0.589
DIP1990
Putative ABC transport system, ATP-binding protein; Similar to Rhizobium sp nodulation ATP-binding protein I NodI SW:NODI_RHIS3 (P72335) (304 aa) fasta scores: E(): 6.6e-22, 35.94% id in 306 aa, and to Streptomyces coelicolor putative ABC transporter ATP-binding subunit SCC30.13 TR:Q9L008 (EMBL:AL352972) (308 aa) fasta scores: E(): 2.8e-31, 39.34% id in 305 aa.
  
 
 0.589
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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