STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP2152Putative transposase (pseudogene); Predicted helix-turn-helix motif with score 1004 (+2.61 SD) at aa 6-27, sequence LGVRAIARHWGRSPGTISKEMT. (206 aa)    
Predicted Functional Partners:
DIP2153
Similar to Bacteriophage phi-105 holin TR:Q38456 (EMBL:L35561) (124 aa) fasta scores: E(): 5.4e-14, 41.22% id in 114 aa, and to Escherichia coli O157:H7 putative holin protein of prophage cp-933c Z1852 or ECS1595 TR:AAG55949 (EMBL:AE005328) (129 aa) fasta scores: E(): 1.7e-07, 40.77% id in 103 aa.
       0.547
DIP2154
Putative DNA-binding bacteriophage protein; Similar to Xylella fastidiosa phage-related protein XF0684 TR:Q9PFH4 (EMBL:AE003912) (503 aa) fasta scores: E(): 1.8e-13, 56.52% id in 92 aa, and to Lactobacillus casei bacteriophage A2 putative Antirepressor Ant TR:O64368 (EMBL:AJ251789) (160 aa) fasta scores: E(): 2.9e-08, 36.69% id in 139 aa, and to Bacteriophage r1t integrase, repressor protein TR:Q38091 (EMBL:U38906) (265 aa) fasta scores: E(): 2.3e-06, 36.98% id in 219 aa.
       0.547
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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