STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP2279Putative ABC transport system, ATP-binding subunit; Similar to many eg. Bacillus halodurans ABC transporter BH3493 SWALL:Q9K777 (EMBL:AP001519) (283 aa) fasta scores: E(): 3.8e-18, 33.97% id in 209 aa, and to Bacillus subtilis hypothetical ABC transporter ATP-binding protein YhcG SWALL:YHCG_BACSU (SWALL:P54591) (232 aa) fasta scores: E(): 4.1e-12, 31.01% id in 216 aa. (289 aa)    
Predicted Functional Partners:
DIP2280
Similar to many eg. Bacillus halodurans transcriptional regulator BH3492 SWALL:Q9K778 (EMBL:AP001519) (129 aa) fasta scores: E(): 6.6e-15, 43.36% id in 113 aa.
 
  
 0.966
DIP2278
Putative integral membrane protein; No significant database matches. Lies downstream of a putative ABC transporter ATP-binding subunit.
       0.773
DIP2143
Putative ABC transport system integral membrane protein; Weakly similar to Bacillus subtilis hypothetical YxlG TR:P94375 (EMBL:D83026) (259 aa) fasta scores: E(): 1.2, 24.72% id in 182 aa, and to Rhizobium loti Mll2378 protein TR:Q98IJ2 (EMBL:AP002999) (339 aa) fasta scores: E(): 1.3, 26.98% id in 252 aa. Lies alongside a putative ABC transporter ATP-binding subunit.
  
 
 0.589
DIP2281
Conserved hypothetical protein; Similar to Streptomyces coelicolor hypothetical 44.0 kDa protein SC4G6.31c SWALL:Q9S2S7 (EMBL:AL096884) (403 aa) fasta scores: E(): 4.6e-09, 25.49% id in 459 aa.
       0.472
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.