STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP0615Putative exported protein (Pseudogene); ACA in pertussis; (G)ACA in bronchiseptica. (319 aa)    
Predicted Functional Partners:
BP3051
Putative membrane protein; Similar to Agrobacterium tumefaciens Agr_c_184p TR:AAK85938 (EMBL:AE007953) (501 aa) fasta scores: E(): 5.5e-122, 65.86% id in 501 aa, and to Rhizobium meliloti conserved hypothetical protein SMB20027 TR:CAC48430 (EMBL:AL603642) (501 aa) fasta scores: E(): 1.1e-121, 65.26% id in 501 aa. Also similar to BP3869, 42.886% identity (43.776% ungapped) in 492 aa overlap.
 
  
 0.814
BP0616
Conserved hypothetical protein; Similar to Mycobacterium tuberculosis CDC1551 conserved hypothetical protein Mt3614 TR:AAK47972 (EMBL:AE007164) (278 aa) fasta scores: E(): 4.2e-15, 27.698% id in 278 aa, and to Agrobacterium tumefaciens Agr_c_2623p TR:AAK87214 (EMBL:AE008068) (291 aa) fasta scores: E(): 8.6e-11, 30.516% id in 213 aa.
  
    0.740
BP3869
Putative tricarboxylic transport membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0752 TR:Q9I5H7 (EMBL:AE004510) (505 aa) fasta scores: E(): 1.9e-113, 62.72% id in 499 aa, and to Salmonella enterica hypothetical protein TctA TR:Q9FA44 (EMBL:AF020810) (504 aa) fasta scores: E(): 6.9e-112, 60.56% id in 497 aa.
 
  
 0.675
BP3050
Putative membrane protein; Similar to Agrobacterium tumefaciens AGR_C_182p TR:AAK85937 (EMBL:AE007953) (153 aa) fasta scores: E(): 2.8e-11, 35.33% id in 133 aa.
 
  
 0.521
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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