STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP0882Putative exported protein (Pseudogene); (GCGCCGGC)3 in pertussis;(GCGCCGGC)2 in parapertussis and bronchiseptica. (450 aa)    
Predicted Functional Partners:
BP0884
Probable carboxylase; Similar to Methanococcus jannaschii pyruvate carboxylase subunit B PycB or Mj1231 SW:PYCB_METJA (Q58628) (567 aa) fasta scores: E(): 5.8e-52, 35.685% id in 482 aa, and to Pyrococcus horikoshii 571aa long hypothetical oxaloacetate decarboxylase alpha chain ph0834 TR:O58564 (EMBL:AP000003) (571 aa) fasta scores: E(): 3.8e-49, 38.073% id in 436 aa.
  
    0.898
gpmA
Phosphoglycerate mutase 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
    0.702
BP0883
Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
    0.692
ldcA
Similar to Escherichia coli muramoyltetrapeptide carboxypeptidase LdcA or B1192 SW:LDCA_ECOLI (P76008) (304 aa) fasta scores: E(): 1.3e-16, 32.83% id in 265 aa, and to Streptomyces coelicolor hypothetical protein Sc9c7.25 SW:YC25_STRCO (Q9ZBI5) (310 aa) fasta scores: E(): 7.3e-24, 40.62% id in 320 aa.
   
    0.670
BP0885
Conserved hypothetical protein; Similar to Rhizobium loti Mlr4612 protein Mlr4612 TR:Q98DP4 (EMBL:AP003004) (122 aa) fasta scores: E(): 3, 29.487% id in 78 aa.
       0.639
BP0718
Transposase (Pseudogene); Inverted repeat for IS481 element.
 
  
 0.610
BP3556
Bacteriophage-related DNA polymerase; C-terminus is similar to the C-terminal regions of Rhizobium loti MLL7705 TR:Q985F0 (EMBL:AP003012) (291 aa) fasta scores: E(): 9.6e-24, 46.66% id in 255 aa, and Treponema pallidum bacteriophage-type DNA polymerase TP0229 TR:O83257 (EMBL:AE001204) (277 aa) fasta scores: E(): 5e-23, 46.18% id in 223 aa. Possible alternative translational start site.
  
    0.608
BP0608
Putative peptidase; Similar to Pseudomonas aeruginosa hypothetical protein Pa5133 TR:Q9HU51 (EMBL:AE004926) (428 aa) fasta scores: E(): 4.3e-20, 33.665% id in 502 aa, and to Escherichia coli hypothetical 46.6 kDa protein in secB-tdh intergenic region YibP or B3613 SW:YIBP_ECOLI (P37690) (419 aa) fasta scores: E(): 1e-14, 31.218% id in 394 aa.
   
    0.568
ctpA
Similar to Bartonella bacilliformis carboxy-terminal processing protease precursor CtpA SW:CTPA_BARBA (Q44879) (434 aa) fasta scores: E(): 8.3e-36, 44.545% id in 440 aa, and to Bartonella quintana carboxy-terminal protease CtpA TR:Q9ZF67 (EMBL:AF110497) (441 aa) fasta scores: E(): 1.5e-38, 44.622% id in 437 aa; Belongs to the peptidase S41A family.
   
    0.536
BP0887
Conserved hypothetical protein; Similar to Arabidopsis thaliana induced upon wounding stress TR:Q39171 (EMBL:X99793) (386 aa) fasta scores: E(): 9.1e-20, 30.458% id in 371 aa, and to Arabidopsis thaliana hypothetical 44.2 kDa protein T22a6.50 or At4g24220 TR:Q9STX2 (EMBL:AL078637) (388 aa) fasta scores: E(): 6.2e-26, 31.892% id in 370 aa.
 
     0.443
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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