STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
texTranscription accessory protein; Transcription accessory protein. Exact function not known. (791 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.905
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.861
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.841
gltS
Transposase (Pseudogene); Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
   
  
 0.678
BP1145
Similar to Escherichia coli probable ATP-dependent helicase DinG or RarB or B0799 SW:DING_ECOLI (P27296) (716 aa) fasta scores: E(): 2.1e-27, 30.15% id in 703 aa, and to Escherichia coli probable ATP-dependent helicase YoaA or B1808 SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E(): 3.1e-41, 40.49% id in 684 aa.
  
    0.589
BP3576
ABC transporter ATP-binding protein; Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG SW:BRAG_PSEAE (P21630) (233 aa) fasta scores: E(): 3.1e-24, 39.91% id in 233 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein SMC03119 TR:CAC47553 (EMBL:AL591792) (233 aa) fasta scores: E(): 3.3e-50, 59.65% id in 233 aa.
   
  
 0.430
BP0145
Putative enoyl-CoA hydratase/isomerase; Identical to the previously sequenced Bordetella pertussis hypothetical 29.5 kDa protein TR:O30448 (EMBL:AF006000) (270 aa) fasta scores: E(): 3e-109, 100.000% id in 270 aa, and similar to Escherichia coli naphthoate synthase MenB or B2262 SW:MENB_ECOLI (P27290) (285 aa) fasta scores: E(): 3.5e-20, 33.969% id in 262 aa.
      
 0.428
BP1782
Similar to Escherichia coli probable enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta scores: E(): 4e-24, 38.79% id in 250 aa, and to Caulobacter crescentus enoyl-CoA hydratase/isomerase family protein cc2575 TR:Q9A582 (EMBL:AE005925) (265 aa) fasta scores: E(): 4.2e-25, 35.84% id in 265 aa.
      
 0.428
BP3305
Similar to Caulobacter crescentus enoyl-CoA hydratase/isomerase family protein cc0397 TR:Q9AB37 (EMBL:AE005712) (256 aa) fasta scores: E(): 4.8e-33, 46.41% id in 237 aa, and to Mus musculus peroxisomal 3,2-trans-enoyl-CoA isomerase PecI SW:PECI_MOUSE (Q9WUR2) (358 aa) fasta scores: E(): 4.6e-20, 34.13% id in 249 aa.
      
 0.428
BP3317
Putative enoyl-CoA hydratase/isomerase; Similar to Mycobacterium tuberculosis probable enoyl-CoA hydratase EchA6 or Rv0905 or Mt0928 or mtcy31.33 SW:ECH6_MYCTU (Q10533) (243 aa) fasta scores: E(): 2.9e-11, 34.41% id in 215 aa.
      
 0.428
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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