STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1219Putative phytoene synthase; Similar to Narcissus pseudonarcissus phytoene synthase precursor Psy SW:PSY_NARPS (P53797) (423 aa) fasta scores: E(): 8.1e-29, 32.72% id in 275 aa, and to Neisseria meningitidis phytoene synthase, putative Nmb1168 or Nmb1130 TR:Q9JRU9 (EMBL:AE002465) (290 aa) fasta scores: E(): 3.7e-54, 51.43% id in 278 aa. (287 aa)    
Predicted Functional Partners:
BP1220
Similar to Streptomyces griseus phytoene synthase CrtB or CrtI SW:CRTB_STRGR (P54977) (342 aa) fasta scores: E(): 2.4e-14, 34.57% id in 269 aa, and to Neisseria meningitidis putative transferase Nma1721 TR:Q9JTL7 (EMBL:AL162756) (276 aa) fasta scores: E(): 1.9e-49, 50.54% id in 275 aa.
   
0.980
BP1218
Putative exported protein; Similar to Zymomonas mobilis shc hpnE TR:Q56996 (EMBL:X80766) (414 aa) fasta scores: E(): 4.8e-06, 25.87% id in 456 aa, and to Neisseria meningitidis putative oxidoreductase Nma1338 TR:Q9JUF6 (EMBL:AL162755) (437 aa) fasta scores: E(): 5.1e-33, 38.92% id in 447 aa.
    0.977
BP2799
Similar to Bradyrhizobium japonicum probable geranyltranstransferase SW:ISPA_BRAJA (Q45220) (332 aa) fasta scores: E(): 2.2e-42, 49.65% id in 288 aa; Belongs to the FPP/GGPP synthase family.
  
 0.930
ispB
Similar to Escherichia coli octaprenyl-diphosphate synthase IspB or Cel or B3187 SW:ISPB_ECOLI (P19641) (323 aa) fasta scores: E(): 1.2e-63, 53.560% id in 323 aa, and to Vibrio cholerae octaprenyl-diphosphate synthase Vc0434 TR:Q9KUT1 (EMBL:AE004131) (348 aa) fasta scores: E(): 3.1e-63, 53.870% id in 323 aa; Belongs to the FPP/GGPP synthase family.
  
 0.899
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.823
norM
Similar to Escherichia coli multidrug resistance protein NorM or B1663 SW:NORM_ECOLI (P37340) (457 aa) fasta scores: E(): 1.2e-33, 32% id in 450 aa, and to Neisseria meningitidis probable multidrug resistance protein NorM or Nmb0812 SW:NORM_NEIMB (Q9K015) (459 aa) fasta scores: E(): 3e-46, 35.21% id in 443 aa.
   
 
 0.717
gap
Similar to Pseudomonas aeruginosa glyceraldehyde 3-phosphate dehydrogenase Gap or HexC or pa3195 SWALL:G3P_PSEAE (SWALL:P27726) (334 aa) fasta scores: E(): 9.1e-84, 66.07% id in 336 aa, and to Alcaligenes eutrophus glyceraldehyde 3-phosphate dehydrogenase, plasmid cbbgP SWALL:G3PP_ALCEU (SWALL:P50322) (336 aa) fasta scores: E(): 1.1e-107, 84.52% id in 336 aa; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.691
nuoH
NADH-ubiquinone oxidoreductase, chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
 0.670
BP2100
Similar to Caulobacter crescentus hypothetical protein CC1431 TR:Q9A8C3 (EMBL:AE005818) (488 aa) fasta scores: E(): 3e-65, 44.136% id in 469 aa.
  
 
 0.658
BP3058
Similar to Neisseria meningitidis hypothetical protein NMA2076 TR:Q9JSY7 (EMBL:AL162758) (405 aa) fasta scores: E(): 2.8e-46, 40.49% id in 405 aa.
 
 
 0.649
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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