STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1304Conserved hypothetical protein (Pseudogene); Large deletion in pertussis relative to parapertussis. (111 aa)    
Predicted Functional Partners:
lolB
Putative outer membrane lipoprotein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
    0.646
BP1305
Conserved hypothetical protein; Its C-terminal region is similar to hypothetical racemases from a wide range of bacteria. No significant similarity over the entire length of the CDS; Belongs to the CoA-transferase III family.
  
    0.517
arsC
Similar to Escherichia coli arsenate reductase ArsC or ArsG or B3503 SW:ARSC_ECOLI (P37311) (141 aa) fasta scores: E(): 9.4e-21, 57.52% id in 113 aa, and to Rhizobium meliloti hypothetical arsenate reductase protein TR:CAC45654 (EMBL:AL591786) (140 aa) fasta scores: E(): 1.4e-23, 59.48% id in 116 aa. Also similar to BP1681, 56.140% identity (57.658% ungapped) in 114 aa overlap.
  
    0.510
BP1485
Putative membrane protein; Similar to The N-terminal region of Pseudomonas aeruginosa twitching motility protein FimV TR:O87015 (EMBL:U93274) (927 aa) fasta scores: E(): 4.1e-09, 28.87% id in 561 aa.
 
    0.486
BP3047
Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.458
BP3800
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0345 TR:Q9I6E8 (EMBL:AE004472) (461 aa) fasta scores: E(): 1.1e-68, 49.78% id in 460 aa, and to Neisseria meningitidis putative integral membrane protein NMA1899 TR:Q9JTB3 (EMBL:AL162757) (449 aa) fasta scores: E(): 9.2e-20, 31.6% id in 443 aa.
  
     0.447
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.419
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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