STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1491Transposase for IS481 element. (316 aa)    
Predicted Functional Partners:
BP1492
Hypothetical protein; Similar to the C-terminal regions of Salmonella typhimurium AdrA protein AdrA TR:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 8.8e-15, 34.71% id in 193 aa, and to Escherichia coli hypothetical protein YaiC or B0385 SW:YAIC_ECOLI (P21830) (371 aa) fasta scores: E(): 1e-14, 34.57% id in 188 aa.
       0.668
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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