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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1758Probable fatty acid desaturase; Similar to Azotobacter vinelandii stearoyl-CoA desaturase TR:Q59162 (EMBL:U37517) (367 aa) fasta scores: E(): 7.8e-68, 47.7% id in 348 aa, and to Pseudomonas aeruginosa probable fatty acid desaturase pa0286 TR:Q9I6K4 (EMBL:AE004466) (392 aa) fasta scores: E(): 2.5e-79, 49.23% id in 392 aa. (402 aa)    
Predicted Functional Partners:
uvrD
DNA helicase II; Similar to Escherichia coli DNA helicase II UvrD or MutU or PdeB or Rad or RecL or B3813 SW:UVRD_ECOLI (P03018) (720 aa) fasta scores: E(): 1.3e-94, 46.5% id in 772 aa, and to Neisseria meningitidis DNA helicase II Nmb0232 TR:Q9K1D0 (EMBL:AE002380) (735 aa) fasta scores: E(): 1.2e-108, 53.78% id in 766 aa.
  
    0.865
coq7
Conserved hypothetical protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
    0.566
BP2489
Similar to Neisseria meningitidis hypothetical protein Nma1720 TR:Q9JTL8 (EMBL:AL162756) (156 aa) fasta scores: E(): 5.3e-17, 40.58% id in 138 aa.
  
     0.531
BP3207
Putative desaturase (pseudogene); In-frame TAG stop codon in pertussis; TGG in parapertussis and bronchiseptica.
 
 
 0.499
BP3399
Similar to Neisseria meningitidis hypothetical protein NMA0721 TR:Q9JVS1 (EMBL:AL162754) (67 aa) fasta scores: E(): 6.4e-07, 48.27% id in 58 aa.
  
     0.494
ascD
Similar to Yersinia pestis and Y. pseudotuberculosis CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or Ypo3116 SW:ASCD_YERPE (P37911) (328 aa) fasta scores: E(): 1.1e-37, 42.85% id in 336 aa, and to Ralstonia solanacearum putative reductase oxidoreductase protein Rsc2434 TR:CAD16141 (EMBL:AL646070) (349 aa) fasta scores: E(): 2.8e-86, 61.2% id in 348 aa.
  
   
 0.482
fabG-6
Ribosomal protein L11 methyltransferase (Pseudogene); This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
  
 0.479
sdhC
Similar to Escherichia coli, and succinate dehydrogenase cytochrome B-556 subunit SdhC or CybA or b0721 or z0875 or ecs0746 SW:DHSC_ECOLI (P10446) (129 aa) fasta scores: E(): 1.7e-06, 27.27% id in 132 aa, and to Rhodoferax fermentans fumarate reductase cytochrome B large subunit TR:O82999 (EMBL:AB015757) (147 aa) fasta scores: E(): 4e-17, 44.89% id in 147 aa.
  
    0.447
BP1757A
Putative exported protein; Similar to the N-terminal region of Escherichia coli PilL TR:AAL05516 (EMBL:AF399919) (357 aa) fasta scores: E(): 3.8, 33.01% id in 106 aa.
       0.443
BP1567
Similar to Pseudomonas aeruginosa hypothetical protein Pa2630 TR:Q9I0K8 (EMBL:AE004691) (389 aa) fasta scores: E(): 1.6e-40, 39.85% id in 409 aa, and to Escherichia coli hypothetical protein YcfD ycfd or b1128 SW:YCFD_ECOLI (P27431) (373 aa) fasta scores: E(): 3.3e-31, 35.24% id in 383 aa.
  
     0.417
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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