STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1919Putative membrane protein; Similar to Pasteurella multocida hypothetical protein Pm0273 TR:Q9CNZ7 (EMBL:AE006062) (427 aa) fasta scores: E(): 1.8e-62, 43.91% id in 419 aa, and to Bacillus halodurans C4-dicarboxylate transport system bh2671 TR:Q9K9H6 (EMBL:AP001516) (426 aa) fasta scores: E(): 4.3e-65, 46.77% id in 419 aa. (422 aa)    
Predicted Functional Partners:
BP1920
Putative exported protein; Similar to Rhizobium meliloti putative ABC transporter periplasmic solute-binding protein Smb20036 TR:CAC48439 (EMBL:AL603642) (338 aa) fasta scores: E(): 4.7e-25, 32.12% id in 330 aa, and to Bacillus halodurans C4-dicarboxylate transport system bh0701 TR:Q9KEZ8 (EMBL:AP001509) (341 aa) fasta scores: E(): 2.1e-23, 31.2% id in 282 aa.
  
 0.979
BP1918
Putative membrane protein; Similar to Bacillus halodurans C4-dicarboxylate transport system Bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 1.4e-07, 29.6% id in 152 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_3346p TR:AAK90250 (EMBL:AE008369) (183 aa) fasta scores: E(): 2.4e-06, 30.3% id in 165 aa.
 
 
 0.972
BP1916
Similar to Rhizobium meliloti hypothetical protein Sma0797 TR:AAK65090 (EMBL:AE007233) (108 aa) fasta scores: E(): 8.5e-16, 42.15% id in 102 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_1239p TR:AAK89197 (EMBL:AE008260) (104 aa) fasta scores: E(): 2.3e-17, 42.71% id in 103 aa.
  
    0.886
bioH
Putative hydrolase; Similar to Kurthia sp538-KA26 BioH TR:Q9AJM9 (EMBL:AB045874) (267 aa) fasta scores: E(): 1.4e-15, 30.36% id in 247 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family Cc2797 TR:Q9A4N3 (EMBL:AE005945) (269 aa) fasta scores: E(): 6.7e-19, 36.54% id in 249 aa.
  
    0.856
BP2671
Putative exported protein; Similar to Rhizobium meliloti putative periplasmic binding protein Smc00271 TR:CAC46278 (EMBL:AL591788) (325 aa) fasta scores: E(): 1.2e-29, 34.74% id in 331 aa.
  
 0.830
BP1864
Putative exported protein; Similar to Rhizobium meliloti putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide Smb21438 TR:Q926B4 (EMBL:AL603646) (332 aa) fasta scores: E(): 1.1e-71, 56.44% id in 326 aa, and to Pasteurella multocida hypothetical protein Pm1252 TR:Q9CLH9 (EMBL:AE006164) (328 aa) fasta scores: E(): 6.7e-35, 33.75% id in 320 aa.
  
 0.811
BP2352
Similar to Rhizobium meliloti putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide Smb21438 TR:CAC49667 (EMBL:AL603646) (332 aa) fasta scores: E(): 9.2e-37, 36.19% id in 315 aa, and to Escherichia coli putative ABC transporter periplasmic binding protein YiaO precursor or b3579 SW:YIAO_ECOLI (P37676) (328 aa) fasta scores: E(): 5.1e-33, 35.43% id in 302 aa.
  
 0.804
BP2353
Putative inner membrane transport protein; Similar to Bacillus halodurans c4-dicarboxylate transport system Bh0702 TR:Q9KEZ7 (EMBL:AP001509) (177 aa) fasta scores: E(): 1.8e-08, 29.16% id in 144 aa, and to Rhizobium meliloti putative permease protein Bmb20296 TR:CAC48686 (EMBL:AL603642) (172 aa) fasta scores: E(): 4.4e-07, 27.77% id in 144 aa.
 
 
 0.800
BP0069
Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis.
 
  
 0.789
BP1917
Putative 3-hydroxyacyl-CoA dehydrogenase; Similar to Oryctolagus cuniculus lambda-crystallin SW:CRYL_RABIT (P14755) (319 aa) fasta scores: E(): 2.2e-28, 35.43% id in 302 aa, and to Rhizobium loti Mll1034 protein TR:Q98LG2 (EMBL:AP002996) (315 aa) fasta scores: E(): 3.9e-35, 39.39% id in 297 aa.
  
    0.787
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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