STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1951Putative ATP-binding component of ABC transporter; Similar to Pseudomonas aeruginosa putative substrate binding protein OhbG TR:O87623 (EMBL:AF087482) (239 aa) fasta scores: E(): 5.2e-31, 46.44% id in 239 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein Smc03119 TR:CAC47553 (EMBL:AL591792) (233 aa) fasta scores: E(): 9.8e-31, 43.69% id in 238 aa. (256 aa)    
Predicted Functional Partners:
BP1949
Putative permease component of branched-chain amino acid transport system; Similar to Pseudomonas aeruginosa putative membrane spanning protein OhbE TR:O87621 (EMBL:AF087482) (614 aa) fasta scores: E(): 1e-31, 31.4% id in 449 aa; Belongs to the binding-protein-dependent transport system permease family.
  
 0.998
BP1950
Similar to Streptococcus pneumoniae branched-chain amino acid ABC transporter, ATP-binding protein sp0752 TR:Q97RP7 (EMBL:AE007382) (254 aa) fasta scores: E(): 1.2e-30, 42.23% id in 251 aa, and to Rhizobium meliloti putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein smc02357 TR:CAC47163 (EMBL:AL591791) (244 aa) fasta scores: E(): 3e-27, 40.98% id in 244 aa.
 
  
0.996
BP1948
Branched-chain amino acid-binding protein; Similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 3.9e-12, 24.37% id in 357 aa, and to Streptococcus pneumoniae branched-chain amino acid ABC transporter, amino acid-binding protein Sp0749 TR:Q97RQ0 (EMBL:AE007382) (386 aa) fasta scores: E(): 9.5e-12, 24.3% id in 362 aa.
 
  
 0.994
BP1961
HMMPfam hit to PF01315, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain.
   
    0.944
BP1954
Similar to Streptomyces coelicolor putative salicylate hydroxylase Sce29.14C TR:Q9Z4Y6 (EMBL:AL035707) (420 aa) fasta scores: E(): 2.3e-46, 40.42% id in 329 aa, and to Acinetobacter SpADP1. hypothetical 42.4 kDa protein TR:O24844 (EMBL:AF009672) (381 aa) fasta scores: E(): 1.2e-50, 38.19% id in 377 aa.
   
    0.942
bfrI
Putative ferrisiderophore receptor; Similar to Pseudomonas aeruginosa hydroxamate-type ferrisiderophore receptor FiuA TR:O68595 (EMBL:AF051691) (802 aa) fasta scores: E(): 1.7e-71, 36.83% id in 714 aa, and to Salmonella typhimurium ferrichrome iron receptor FhuA TR:O86925 (EMBL:Y14025) (729 aa) fasta scores: E(): 2e-65, 35.72% id in 725 aa.
   
    0.942
BP1953
Putative cytochrome (Pseudogene); (CG)4 in pertussis; (CG)3 in parapertussis.
   
    0.938
BP1965
Putative transcriptional regulator (Pseudogene); In-frame TGA stop codon in pertussis; TGG in parapertussis and bronchiseptica.
   
    0.847
BP3719
Similar to the C-terminal region of Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: E(): 8.4e-09, 29.73% id in 333 aa, and to the full length Streptomyces coelicolor putative branched amino acid transport system permease SC8A11.12 TR:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): 7.1e-26, 32.09% id in 324 aa.
  
 0.792
BP0303
Probable branched-chain amino acid transport system, permease component; Similar to Rhizobium meliloti putative permease ABC transporter protein Smc03117 TR:CAC47555 (EMBL:AL591792) (330 aa) fasta scores: E(): 4.2e-27, 39.000% id in 300 aa, and to Agrobacterium tumefaciens Agr_l_1453p TR:AAK89305 (EMBL:AE008271) (335 aa) fasta scores: E(): 4.9e-28, 38.658% id in 313 aa; Belongs to the binding-protein-dependent transport system permease family.
  
 0.789
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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