STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1958Putative isochorismatase; Similar to Arthrobacter sp N-carbamoylsarcosine amidase SW:CSH_ARTSP (P32400) (264 aa) fasta scores: E(): 2e-14, 32.67% id in 202 aa, and to Arthrobacter keyseri putative phthalate ester hydrolase pehA TR:Q9AGK9 (EMBL:AF331043) (218 aa) fasta scores: E(): 3.4e-19, 37.3% id in 193 aa. Identical to BP1958, 100.000% identity (100.000% ungapped) in 205 aa overlap. (205 aa)    
Predicted Functional Partners:
BP1957
Probable alpha/beta hydrolase (Pseudogene); G in pertussis; G(AG) in parapertussis and bronchiseptica.
 
   
 0.925
BP0582
Putative isochorismatase; Similar to Arthrobacter sp N-carbamoylsarcosine amidase SW:CSH_ARTSP (P32400) (264 aa) fasta scores: E(): 2e-14, 32.673% id in 202 aa, and to Thermoplasma volcanium isochorismatase Tvg0787823 TR:Q97AM6 (EMBL:AP000993) (175 aa) fasta scores: E(): 6.1e-07, 28.409% id in 176 aa. Identical to BP1958, 100.000% identity (100.000% ungapped) in 205 aa overlap.
  
 
  
0.900
BP0581
Probable hydrolase (Pseudogene); G in pertussis; G(AG) in parapertussis and bronchiseptica.
 
   
 0.733
maiA
Maleate cis-trans isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
   
 0.704
maiA-2
Similar to Serratia marcescens maleate cis-trans isomerase MaiA TR:Q9KWI0 (EMBL:AB035810) (250 aa) fasta scores: E(): 8.2e-69, 79.67% id in 246 aa, and to Bacillus stearothermophilus maleate cis-trans isomerase MaiA TR:Q9WX57 (EMBL:AB015134) (251 aa) fasta scores: E(): 1.1e-56, 65.46% id in 249 aa. Identical to BP0579, 99.600% identity (99.600% ungapped) in 250 aa overlap.
 
   
 0.704
BP2971
Putative hydrolase; Similar to many proteins of undefined function including: Rhizobium loti Mlr4169 protein TR:Q98EN3 (EMBL:AP003003) (223 aa) fasta scores: E(): 5.1e-11, 32.74% id in 226 aa, and to Streptomyces coelicolor putative hydrolase Scd65.07C TR:Q9F2S5 (EMBL:AL392176) (224 aa) fasta scores: E(): 1.2e-07, 28.76% id in 226 aa.
  
     0.695
BP1954
Similar to Streptomyces coelicolor putative salicylate hydroxylase Sce29.14C TR:Q9Z4Y6 (EMBL:AL035707) (420 aa) fasta scores: E(): 2.3e-46, 40.42% id in 329 aa, and to Acinetobacter SpADP1. hypothetical 42.4 kDa protein TR:O24844 (EMBL:AF009672) (381 aa) fasta scores: E(): 1.2e-50, 38.19% id in 377 aa.
 
   
 0.538
nadE
Putative NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.529
BP3498
Conserved hypothetical protein; Similar to Bordetella bronchiseptica arylmalonate decarboxylase SW:AMDA_BORBR (Q05115) (240 aa) fasta scores: E(): 3.9e-06, 27.31% id in 216 aa, and to Pyrococcus horikoshii hypothetical arylmalonate decarboxylase PH1150 TR:O58884 (EMBL:AP000005) (236 aa) fasta scores: E(): 5.2e-15, 30% id in 210 aa. Possible alternative translational start site.
 
   
 0.516
BP1643
Putative exported protein (Pseudogene); Signal peptide predicted for BP1642 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.730 between residues 25 and 26.
 
     0.514
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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