STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BP2112Putative oxidoreductase; The methionine start codon of this CDS is substituted with a threonine. Similar to Escherichia coli oxidoreductase UcpA or B2426 SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): 3.7e-23, 39.84% id in 256 aa, and to Rhizobium sp putative short-chain type dehydrogenase/reductase Y4lA SWALL:Y4LA_RHISN (SWALL:P55541) (278 aa) fasta scores: E(): 2.9e-25, 37.84% id in 251 aa. (262 aa)    
Predicted Functional Partners:
BP0813
Similar to Rhizobium loti probable short-chain dehydrogenase/reductase Mlr0808 TR:Q98LZ5 (EMBL:AP002995) (259 aa) fasta scores: E(): 1.2e-30, 45.985% id in 274 aa, and to Rhizobium meliloti putative oxidoreductase protein Smc01157 TR:CAC41799 (EMBL:AL591783) (259 aa) fasta scores: E(): 2.3e-21, 41.791% id in 268 aa.
  
     0.621
dltA
Putative D-alanine-D-alanyl carrier protein ligase; Similar to Lactococcus lactis D-alanine activating enzyme DltA TR:Q9CG49 (EMBL:AE006358) (499 aa) fasta scores: E(): 6.8e-40, 32.8% id in 445 aa and to Bacillus subtilis D-alanine-activating enzyme DltA SW:DLTA_BACSU (P39581) (503 aa) fasta scores: E(): 1e-32, 36.99% id in 492 aa.
  
   0.559
BP3542
Similar to Picea abies short-chain type dehydrogenase/reductase SW:SDR1_PICAB (Q08632) (271 aa) fasta scores: E(): 2.1e-15, 31.25% id in 240 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase PA2918 TR:Q9HZS9 (EMBL:AE004718) (257 aa) fasta scores: E(): 1.8e-69, 82.57% id in 241 aa.
  
     0.477
BP1635
Putative membrane protein (Pseudogene); 4 probable transmembrane helices predicted for BP1634 by TMHMM2.0 at aa 40-62, 73-95, 108-130 and 145-167.
   
 
 0.411
BP2327
Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa.
   
 
 0.411
ascD
Similar to Yersinia pestis and Y. pseudotuberculosis CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or Ypo3116 SW:ASCD_YERPE (P37911) (328 aa) fasta scores: E(): 1.1e-37, 42.85% id in 336 aa, and to Ralstonia solanacearum putative reductase oxidoreductase protein Rsc2434 TR:CAD16141 (EMBL:AL646070) (349 aa) fasta scores: E(): 2.8e-86, 61.2% id in 348 aa.
 
 0.409
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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