STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcrH1Similar to Pseudomonas aeruginosa regulatory protein PcrH or pa1707 TR:Q9I325 (EMBL:AE004597) (167 aa) fasta scores: E(): 1.4e-12, 37.41% id in 155 aa, and to Yersinia pestis low calcium response locus protein H LcrH or ypcd1.30c or y0051 SW:LCRH_YERPE (P21207) (168 aa) fasta scores: E(): 4.7e-08, 31.66% id in 120 aa. (161 aa)    
Predicted Functional Partners:
bopB
Similar to Bordetella bronchiseptica outer protein B BopB TR:Q9REZ5 (EMBL:AF207789) (400 aa) fasta scores: E(): 2e-118, 96.75% id in 400 aa.
  
 
 0.994
bscJ
Putative type III secretion protein; Similar to many eg. Bordetella bronchiseptica BscJ TR:O68536 (EMBL:AF049488) (274 aa) fasta scores: E(): 4.5e-97, 98.17% id in 274 aa, and to Erwinia amylovora harpin secretion HrcJ precursor TR:Q46620 (EMBL:U56662) (260 aa) fasta scores: E(): 2.7e-29, 44.89% id in 245 aa.
 
  
 0.989
bopN
Putative outer protein N; Similar to many eg. Bordetella bronchiseptica outer protein N BopN TR:Q9REZ4 (EMBL:AF207790) (365 aa) fasta scores: E(): 4.3e-132, 99.17% id in 365 aa, and to Pseudomonas syringae hypersensitivity response secretion protein HrpJ SW:HRPJ_PSESY (Q05395) (346 aa) fasta scores: E(): 5e-08, 26.94% id in 308 aa.
 
  
 0.986
bscL
Putative type III secretion protein; Similar to many eg. Bordetella bronchiseptica BscL TR:O68538 (EMBL:AF049488) (212 aa) fasta scores: E(): 8e-72, 98.58% id in 212 aa, and to Pseudomonas aeruginosa type III export protein PscL or pa1725 TR:Q9I312 (EMBL:AE004598) (214 aa) fasta scores: E(): 2.6e-23, 42.56% id in 195 aa.
 
  
 0.978
BP2258
Hypothetical protein; No significant database matches.
  
  
 0.976
BP2255
Hypothetical protein; No significant database matches.
  
    0.974
bscQ
Putative type III secretion protein; Similar to Bordetella bronchiseptica BscQ TR:Q9L9E0 (EMBL:AF172245) (123 aa) fasta scores: E(): 3.4e-34, 98.9% id in 91 aa, and to Yersinia pestis Yop translocation protein Q SW:YSCQ_YERPE (P42713) (307 aa) fasta scores: E(): 7e-07, 46.37% id in 69 aa.
 
  
 0.973
bscS
Putative type III secretion protein; Similar to Bordetella bronchiseptica BscS TR:Q9L9D8 (EMBL:AF172245) (88 aa) fasta scores: E(): 3.9e-30, 97.72% id in 88 aa, and to Yersinia pestis Yop translocation protein S SW:YSCS_YERPE (P40298) (79 aa) fasta scores: E(): 3e-13, 56.57% id in 76 aa.
 
  
 0.971
bscT
Similar to Pseudomonas aeruginosa translocation protein in type III secretion PscT or pa1691 TR:Q9I336 (EMBL:AE004596) (262 aa) fasta scores: E(): 3.1e-29, 38.84% id in 242 aa, and to Yersinia pestis Yop proteins translocation protein TR:AAC62558 (EMBL:AF074612) (261 aa) fasta scores: E(): 4.8e-29, 35.45% id in 251 aa.
 
  
 0.964
bcrD
Putative type III secretion pore protein; Similar to many eg. Chlamydophila caviae Cds2 protein TR:O34019 (EMBL:U88070) (709 aa) fasta scores: E(): 6e-116, 47.14% id in 700 aa, and to Salmonella typhimurium Invasion protein InvA SW:INVA_SALTY (P35657) (665 aa) fasta scores: E(): 1.4e-90, 43.96% id in 671 aa. Also similar to BP1367, 36.510% identity (38.426% ungapped) in 682 aa overlap.
 
  
 0.962
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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