STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP2397Putative ABC transporter ATP-binding subunit; Similar to Agrobacterium tumefaciens strC58 Agr_l_685p TR:AAK88917 (EMBL:AE008234) (606 aa) fasta scores: E(): 3.4e-108, 55.39% id in 621 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YliA or b0829 SW:YLIA_ECOLI (P75796) (629 aa) fasta scores: E(): 5.9e-70, 66.98% id in 621 aa. (633 aa)    
Predicted Functional Partners:
BP2394
Similar to Escherichia coli hypothetical ABC transporter permease protein YliD or b0832 SW:YLID_ECOLI (P75799) (303 aa) fasta scores: E(): 1.4e-80, 71.88% id in 281 aa, and to Bacillus firmus dipeptide transport system permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: E(): 1.6e-45, 45.12% id in 277 aa.
 
 0.979
BP2395
Similar to Escherichia coli hypothetical ABC transporter permease protein YliC or b0831 SW:YLIC_ECOLI (P75798) (306 aa) fasta scores: E(): 9.4e-92, 76.47% id in 306 aa, and to Bacillus subtilis dipeptide transport system permease protein DppB or dciaB SW:DPPB_BACSU (P26903) (308 aa) fasta scores: E(): 9.5e-39, 37.25% id in 306 aa.
 
 0.979
BP2396
Putative binding-protein-dependent transport periplasmic protein; Similar to Escherichia coli putative binding protein YliB precursor or b0830 SW:YLIB_ECOLI (P75797) (512 aa) fasta scores: E(): 1.3e-117, 57.17% id in 516 aa, and to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SW:DPPA_ECOLI (P23847) (535 aa) fasta scores: E(): 2e-32, 30.54% id in 537 aa.
 
 
 0.973
BP2398
Putative L-asparaginase; Similar to Vibrio cholerae asparaginase, putative vc2603 TR:Q9KNX7 (EMBL:AE004327) (326 aa) fasta scores: E(): 4.2e-47, 48.75% id in 320 aa, and to Lupinus luteus L-asparaginase SW:ASPG_LUPLU (Q9ZSD6) (325 aa) fasta scores: E(): 9.7e-40, 42.99% id in 307 aa.
 
  
 0.836
BP2399
Similar to Clostridium acetobutylicum transcriptional regulators, RpiR family cac1850 TR:Q97I06 (EMBL:AE007693) (293 aa) fasta scores: E(): 1.3e-17, 33.46% id in 263 aa.
  
    0.760
BP2295
Putative integral membrane transport protein; Similar to Rhizobium meliloti probable ABC transporter, permease protein Sma2083 TR:AAK65795 (EMBL:AE007299) (332 aa) fasta scores: E(): 1.4e-52, 52.2% id in 272 aa.
  
 0.747
BP3859
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 1.8e-49, 47.44% id in 333 aa, and to Agrobacterium tumefaciens AGR_pAT_366p TR:AAK90630 (EMBL:AE007895) (324 aa) fasta scores: E(): 8.3e-63, 59.81% id in 316 aa. Similar to the N-terminal region of BP3297, 63.273% identity (63.273% ungapped) in 275 aa overlap; Belongs to the ABC transporter superfamily.
 
  
0.650
BP0724
Similar to Rhizobium sp probable peptide ABC transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) (291 aa) fasta scores: E(): 1.4e-52, 53.307% id in 257 aa, and to Rhizobium loti ABC transporter, permease protein mlr6290 TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: E(): 5.7e-46, 47.547% id in 265 aa. Also similar to several B. pertussis CDSs such as BP3161 (57.348% identity in 279 aa overlap), BP1825 (57.977% identity in 257 aa overlap), BP3459 (55.725% identity in 262 aa overlap), P2592 (40.304% identity in 263 aa overlap).
  
 0.594
BP3566
Putative cobalt transport protein; Similar to Deinococcus radiodurans conserved hypothetical protein DR2468 TR:Q9RRM0 (EMBL:AE002076) (198 aa) fasta scores: E(): 1.1e-21, 46.76% id in 201 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC00963 TR:CAC45461 (EMBL:AL591785) (201 aa) fasta scores: E(): 2.5e-19, 43.41% id in 205 aa.
  
 
 0.588
BP1985
Similar to Streptomyces coelicolor oligopeptide transport integral membrane protein Sc2a11.10 TR:O86571 (EMBL:AL031184) (335 aa) fasta scores: E(): 5.7e-22, 32.79% id in 247 aa, and to Deinococcus radiodurans peptide ABC transporter, permease protein Dr0958 TR:Q9RVR4 (EMBL:AE001948) (332 aa) fasta scores: E(): 3.3e-18, 31.68% id in 243 aa.
 
  
 0.568
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.