STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP3108Similar to Pseudomonas aeruginosa hypothetical protein PA1917 TR:Q9I2I7 (EMBL:AE004617) (115 aa) fasta scores: E(): 8.7e-17, 50% id in 114 aa, and to Pseudomonas aeruginosa hypothetical protein PA3425 TR:Q9HYI0 (EMBL:AE004763) (114 aa) fasta scores: E(): 6.4e-18, 55.76% id in 104 aa. (113 aa)    
Predicted Functional Partners:
BP3109
Similar to Pseudomonas aeruginosa hypothetical protein PA1918 TR:Q9I2I6 (EMBL:AE004617) (466 aa) fasta scores: E(): 1.4e-104, 59.09% id in 462 aa, and to Pseudomonas aeruginosa hypothetical protein PA3424 TR:Q9HYI1 (EMBL:AE004763) (468 aa) fasta scores: E(): 3.2e-29, 32.19% id in 469 aa.
 
    0.967
BP3107
Similar to Streptomyces coelicolor putative gamma-glutamyltranspeptidase SC3C8.26 TR:O69935 (EMBL:AL023861) (603 aa) fasta scores: E(): 3.6e-36, 31.41% id in 573 aa, and to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or B3447 SW:GGT_ECOLI () (580 aa) fasta scores: E(): 1.5e-21, 31.52% id in 533 aa.
  
    0.945
BP3110
Probable MerR-family transcriptional regulator; Similar to Rhizobium meliloti hypothetical protein SMB21187 TR:CAC49253 (EMBL:AL603645) (276 aa) fasta scores: E(): 3.8e-34, 41.32% id in 271 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA4987 TR:Q9HUH8 (EMBL:AE004911) (199 aa) fasta scores: E(): 1.3e-10, 30.8% id in 198 aa.
 
    0.901
BP3317
Putative enoyl-CoA hydratase/isomerase; Similar to Mycobacterium tuberculosis probable enoyl-CoA hydratase EchA6 or Rv0905 or Mt0928 or mtcy31.33 SW:ECH6_MYCTU (Q10533) (243 aa) fasta scores: E(): 2.9e-11, 34.41% id in 215 aa.
   
    0.799
copB
Copper resistance protein; Similar to Pseudomonas aeruginosa copper resistance protein B precursor PcoB or Pa2064 TR:Q9I251 (EMBL:AE004633) (325 aa) fasta scores: E(): 3.3e-41, 42.76% id in 318 aa, and to Pseudomonas syringae copper resistance protein B precursor CopB SW:COPB_PSESM (P12375) (328 aa) fasta scores: E(): 4.2e-39, 42.66% id in 300 aa, and to Escherichia coli copper resistance protein B precursor PcoB SW:PCOB_ECOLI (Q47453) (296 aa) fasta scores: E(): 1.3e-34, 39.66% id in 295 aa.
   
    0.777
BP3106
Putative exported protein; Similar to Rhizobium meliloti conserved hypothetical protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.7e-51, 43.93% id in 330 aa.
  
    0.752
BP3321
Putative amidase; Similar to Rhizobium meliloti putative amidase Sma1377 TR:AAK65414 (EMBL:AE007262) (471 aa) fasta scores: E(): 1.2e-38, 35.2% id in 446 aa, and to Pseudomonas putida amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 3.9e-24, 37.5% id in 456 aa.
   
    0.736
BP3105
N-terminal region of a putative membrane protein (Pseudogene); 3 probable transmembrane helices predicted for BP3104 by TMHMM2.0 at aa 21-43, 58-80 and 87-106.
  
    0.704
copA
Copper resitance protein; Similar to Ralstonia metallidurans CopA protein TR:Q9F3S1 (EMBL:AJ278983) (614 aa) fasta scores: E(): 1.2e-133, 59.63% id in 602 aa, and to Pseudomonas syringae copper resistance protein A precursor CopA SW:COPA_PSESM (P12374) (609 aa) fasta scores: E(): 2.8e-95, 61.85% id in 603 aa, and to Escherichia coli copper resistance protein A precursor PcoA SW:PCOA_ECOLI (Q47452) (605 aa) fasta scores: E(): 5.4e-91, 59.05% id in 613 aa.
   
    0.700
BP2138
Similar to ABC-transporter ATP-binding components e.g. Vibrio cholerae putative toxin secretion transporter VC1446 TR:Q9KS15 (EMBL:AE004223) (721 aa) fasta scores: E(): 3.2e-44, 32.58% id in 577 aa.
   
    0.663
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.