STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BP3428Putative branched-chain amino acid transport permease (partial); Partial CDS. Disrupted by a recombination event. Upstream region deleted relative to B. parapertussis and B. bronchiseptica. Similar to many transporters eg. Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein dr2120 TR:Q9RSK4 (EMBL:AE002047) (310 aa) fasta scores: E(): 4.1e-14, 32.77% id in 238 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein livh livh or liva or stm3563 SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 1.2e-05, 2 [...] (242 aa)    
Predicted Functional Partners:
BP3429
Similar to Streptococcus pneumoniae branched-chain amino acid ABC transporter permease protein sp0750 TR:Q97RP9 (EMBL:AE007382) (289 aa) fasta scores: E(): 1.4e-27, 33.56% id in 286 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraD or pa1073 SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): 2.1e-13, 30.06% id in 296 aa.
 
  
 0.962
BP3431
Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, ATP-binding protein Dra0260 TR:Q9RYP9 (EMBL:AE001863) (238 aa) fasta scores: E(): 6.1e-27, 41.35% id in 237 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or pa1070 SW:BRAG_PSEAE (P21630) (233 aa) fasta scores: E(): 4e-22, 38.02% id in 213 aa.
 
  
 0.932
BP3430
Similar to many predicted transporters eg. Rhizobium meliloti putative high-affinity branched-chain amino acid transport ATP-binding ABC transporter protein smc02357 TR:CAC47163 (EMBL:AL591791) (244 aa) fasta scores: E(): 4.7e-23, 36.17% id in 235 aa, and to Thermotoga maritima ABC transporter ATP-binding protein Tm1054 TR:Q9X0E4 (EMBL:AE001765) (236 aa) fasta scores: E(): 1e-22, 34.61% id in 234 aa.
  
 0.914
BP3427
Putative branched-chain amino acid binding protein (partial); Partial CDS. May be disrupted by a recombination event. Upstream region deleted relative to B. parapertussis and B. bronchiseptica. Similar to the C-terminal portion of many larger hypothetical proteins eg. Aeropyrum pernix 430aa long hypothetical leu/ile/val-binding protein ape2521 TR:Q9Y8W3 (EMBL:AP000064) (430 aa) fasta scores: E(): 8.4e-06, 25.19% id in 254 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter pa4913 TR:Q9HUQ0 (EMBL:AE004904) (374 aa) fasta scores: E(): 0.00015, 26.12% i [...]
 
  
 0.879
BP0621
Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 8.7e-22, 32.895% id in 304 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 2.1e-22, 32.895% id in 304 aa.
 
  
 0.844
BP2746
Putative ABC transport protein, inner membrane component; Similar to many putative membrane transport proteins including: Rhizobium meliloti probable high-affinity branched-chain amino acid transport permease ABC transporter protein TR:CAC47064 (EMBL:AL591790) (300 aa) fasta scores: E(): 9.8e-43, 48.52% id in 305 aa and Escherichia coli high-affinity branched-chain amino acid transport system permease protein livH or B3457 or Z4827 or Ecs4304 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 1e-39, 45.09% id in 306 aa.
 
  
 0.844
BP3193
Putative ABC transpoter permease protein; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease protein DR0281 TR:Q9RXM9 (EMBL:AE001889) (285 aa) fasta scores: E(): 2.4e-25, 31.57% id in 285 aa; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.844
livH
Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 4.1e-17, 33.88% id in 304 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 3.9e-18, 35.19% id in 304 aa.
 
  
 0.843
BP3720
Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease protein BraD SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): 1.3e-18, 34.88% id in 301 aa, and to Streptomyces coelicolor putative branched amino acid transport system permease SC8A11.11 TR:Q9FBZ9 (EMBL:AL391041) (290 aa) fasta scores: E(): 4.4e-34, 40.78% id in 282 aa.
 
  
 0.843
livH-2
Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E(): 3.7e-61, 58.52% id in 311 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport system permease protein LivH or LivA SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 7.7e-62, 59.67% id in 310 aa.
 
  
 0.839
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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