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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP3650Similar to Azotobacter vinelandii cytochrome c4 precursor CycA SW:CYC4_AZOVI (P43302) (210 aa) fasta scores: E(): 2.2e-18, 39.89% id in 193 aa, and to Pseudomonas stutzeri cytochrome c4 precursor CC4 SW:CYC4_PSEST (Q52369) (210 aa) fasta scores: E(): 9.6e-18, 37.82% id in 193 aa. Possible alternative translational start sites. (233 aa)    
Predicted Functional Partners:
petC
Similar to Chromatium vinosum cytochrome C1 precursor PetC SW:CY1_CHRVI (O31216) (244 aa) fasta scores: E(): 2.7e-26, 41.637% id in 281 aa, and to Neisseria meningitidis ubiquinol--cytochrome C reductase, cytochrome C1 Nmb2051 TR:Q9JXH1 (EMBL:AE002555) (266 aa) fasta scores: E(): 6.6e-32, 42.908% id in 282 aa.
 
  
 0.809
petA
Ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.780
BP2490
Similar in parts to many cytochromes including: to Vibrio cholerae cytochrome C554 Vc2241 TR:Q9KPX1 (EMBL:AE004296) (107 aa) fasta scores: E(): 4.7e-06, 41.07% id in 112 aa and to Pseudomonas stutzeri cytochrome C4 precursor Cc4 SW:CYC4_PSEST (Q52369) (210 aa) fasta scores: E(): 2.2e-05, 32.71% id in 107 aa.
 
     0.775
BP2491
Similar in parts to many cytochromes including: Burkholderia solanacearum putative periplasmic cytochrome type-C oxidoreductase Srsc0999 TR:CAD14701 (EMBL:AL646062) (115 aa) fasta scores: E(): 3.2e-21, 64.7% id in 102 aa and to Paracoccus sp cytochrome C-554 SW:C554_PARSP (P00105) (83 aa) fasta scores: E(): 3.8e-07, 41.66% id in 84 aa.
  
    0.714
petB
Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.713
BP3651
Putative membrane protein; Similar to Neisseria meningitidis putative cytochrome c-type biogenesis protein NMB1804 TR:Q9JY04 (EMBL:AE002530) (671 aa) fasta scores: E(): 3.1e-46, 37.75% id in 694 aa, and to Thiobacillus ferrooxidans putative cytochrome c-type maturation protein ResB TR:Q9ZG10 (EMBL:AF220499) (591 aa) fasta scores: E(): 2.1e-39, 31.79% id in 673 aa.
  
  
 0.606
BP3652
Putative cytochrome c asssembly protein; C-terminus is similar to the C-terminal region of Chlamydomonas reinhardtii cytochrome c biogenesis protein CcsA SW:CCSA_CHLRE (P48269) (353 aa) fasta scores: E(): 1.4e-16, 32.75% id in 287 aa. Similar to Neisseria meningitidis putative cytochrome c-type biogenesis protein NMB1803 TR:Q9JY05 (EMBL:AE002530) (395 aa) fasta scores: E(): 1.3e-41, 48.81% id in 422 aa.
     
 0.597
BP2170
Probable cytochrome C oxidase subunit (Pseudogene); (C)1 in pertussis; (C)2 in parapertussis and bronchiseptica.
 
 
 0.569
hemB
Similar to Pseudomonas aeruginosa delta-aminolevulinic acid dehydratase HemB or Pa5243 SW:HEM2_PSEAE (Q59643) (337 aa) fasta scores: E(): 1.2e-78, 65.15% id in 330 aa, and to Neisseria meningitidis delta-aminolevulinic acid dehydratase NMB0801 TR:Q9K025 (EMBL:AE002433) (333 aa) fasta scores: E(): 2.1e-86, 71.77% id in 326 aa; Belongs to the ALAD family.
     
 0.568
engB
Putative GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.563
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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