STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katACatalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide. (482 aa)    
Predicted Functional Partners:
glcE
Glycolate oxidase subunit; Similar to Pseudomonas aeruginosa glycolate oxidase subunit GlcE or Pa5354 TR:Q9HTK4 (EMBL:AE004947) (359 aa) fasta scores: E(): 2.9e-36, 51.51% id in 363 aa, and to Escherichia coli glycolate oxidase subunit GlcE or Gox or b2977.1 SW:GLCE_ECOLI (P52073) (350 aa) fasta scores: E(): 7.5e-36, 47.93% id in 363 aa.
   
 0.917
glcD
Similar to Escherichia coli glycolate oxidase subunit GlcD or Gox or b2979 SW:GLCD_ECOLI (P52075) (499 aa) fasta scores: E(): 1.7e-117, 60.2% id in 495 aa, and to Pseudomonas aeruginosa glycolate oxidase subunit GlcD or Pa5355 TR:Q9HTK3 (EMBL:AE004947) (499 aa) fasta scores: E(): 8.2e-120, 62.02% id in 503 aa.
   
 0.917
kynU
Conserved hypothetical protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
   
 
 0.905
glcF
Similar to Escherichia coli glycolate oxidase iron-sulfur subunit GlcF or Gox or b2978 SW:GLCF_ECOLI (P52074) (407 aa) fasta scores: E(): 3.4e-77, 52.69% id in 408 aa and to Rhizobium loti glycolate oxidase subunit Mlr6920 TR:Q987T7 (EMBL:AP003010) (441 aa) fasta scores: E(): 4.7e-34, 42.79% id in 423 aa.
     
 0.900
hfq
Putative RNA-binding regulatory protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.798
BP2067
Putative superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 0.793
ahpC
Similar to Streptomyces coelicolor alkyl hydroperoxide reductase AhpC SWALL:Q9RN72 (EMBL:AF186371) (184 aa) fasta scores: E(): 9.6e-31, 51.09% id in 182 aa, and to Ralstonia solanacearum putative alkyl hydroperoxide reductase AhpC2 or rsc1646 or rs04022 SWALL:Q8XYW0 (EMBL:AL646065) (230 aa) fasta scores: E(): 2.4e-63, 85.16% id in 182 aa.
  
 
 0.777
BP0965
Similar to Mus musculus antioxidant protein 2 Aop2 or Ltw4 or Prdx5 SW:AOP2_MOUSE (O08709) (223 aa) fasta scores: E(): 1.3e-42, 55.605% id in 223 aa, and to Pseudomonas aeruginosa probable antioxidant protein Pa3450 TR:Q9HYF6 (EMBL:AE004765) (212 aa) fasta scores: E(): 6.9e-68, 79.048% id in 210 aa.
  
 
 0.720
trxB
Similar to Escherichia coli thioredoxin reductase TrxB or b0888 or z1232 or Ecs0973 SW:TRXB_ECOLI (P09625) (320 aa) fasta scores: E(): 1e-84, 71.65% id in 314 aa, and to Vibrio cholerae thioredoxin reductase Vc1182 TR:Q9KSS4 (EMBL:AE004198) (318 aa) fasta scores: E(): 1.9e-90, 73.04% id in 319 aa.
   
 
 0.711
icd
Similar to Escherichia coli isocitrate dehydrogenase [NADP] Icd or IcdA or IcdE or b1136 SW:IDH_ECOLI (P08200) (416 aa) fasta scores: E(): 4.7e-116, 71.91% id in 413 aa, and to Pseudomonas aeruginosa isocitrate dehydrogenase icd or pa2623 TR:Q9I0L5 (EMBL:AE004691) (418 aa) fasta scores: E(): 5.3e-123, 76.31% id in 418 aa.
  
 0.646
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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